AMCG00003010 (gcp2,tubgcp2,LOC106589265)


Basic Information

Item Value
gene id AMCG00003010
gene name gcp2,tubgcp2,LOC106589265
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9621880 ~ 9629686 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003010
AGAATATATAAGTTGAAGTTGACGGTAAAGTCATATTTTCTAGGCCGGAACCTTACTTTCAGGGACAGAGTTTCCCGAGTGTGACGGACGTTGGTTGAGGTTGCAGTGgagggttttgtttgtgtttcgcGCTGCCAAGGGGCGGCCTCCAGGAATAAGCCATGAGTGAGTTCCGTATTCACCACGACGTGAACGAGTTGCTCAGTCTGCTCCATGTGCGTGGCGGCGATGGGGCAGAGGTCTACATTGACCTCCTGCAGAAGAACAGGACGCCCTACGTCACCACCACAGTGTCTGCACACAGCGCCAAGGTGAAAATTGCTGAATATTCAAAAACACCCGAGgacttcttaaaaaaatatgatgaaCTGAAATCCAGGAATGTCCGAAACTTGGATCCCCTGGTTTATCTGCTATCCAAGTTGACTGAAGATAAAGAGACCCTGCAATATCTGCAACAGAATGCTAAGGAAAAATCTGAGCTCTCGGCAAATGCTGCGTCTAGTAGCAGCACGAACTTCAACATTCCTGCAACCAGTACGAAGATGTCAATGCAAGAACTGGAGGAGCTCAGGAAGAAGCTGGGGAATGTGACCGCCAGCTCCACTGTACAGCAGcCCTCCGAGGTGACTAGGAAGATGCTTAGGGACAGACATAATAAGAAGAATCCCATGCAGCCCATTCCTGTGTTTCCAAACTGGGTTTATGACAGGCCTGCTCTTATTGGGGATTTCATCACGGGCACCAGTGGGATGACTGAGCCAGCAGTTGCTGTTGGCAACTTGCCATTAGCTGCTCAGGAGCAAGCTTTAGTAGAAGACCTGTTGTATTTACTGATTGGAGTGGATGGCAGAGAGATTACAGCCCAGCCAGTTTTGGGCCGACAGAGCCGCTCCTTTATTGTTGATGCCACTCTAGACATGTCCATTAAAGAGCTTGTGAACCGTATTCTGCCCATTGCTGCCAGTTATTCCACAATAACAAGGTTCATTGAAGAGAAGTCTTCTTTTGAATACGGCCAAGTCAATCACGCATTGACCGCAGCCATGAGAACATTAATGAAGGAGTACATGATCCTGGTGACCCAGCTGGAACACCTGCAAAGACAGAGCATGCTATCTCTTCAGAAACTGTGGTTTTATATTCAGCCCACAATGAGAACAATGGAAATCCTAGCTTCGATTGcaacCTCAGTTGATAAGGGAGACTGCATGGGTGGCGCAACACTCAGTCTCCTTCATGACCGGACGTTCAACTTCACCGGAGACAGTCAGGCCCAGGAGTTGTGTCTGTACCTCACGAAAGCAGCCAGCGTTCCTTATTTTGAAATCCTGGAGAAGTGGATCTACAGGGGGATCATCAAAGACCCATACAGTGAATTCATGGTGGAAGAACATGAGCTGCAGAAGGAAAAGATTCAGGAAGACTATAATGATAAGTACTGGGATCAGAGATACACCATAGTGCAGCACAGAATCCCATCCTTCCTCCAAAAGATGGCCGACAAAATATTGAGCACAGGGAAGTATCTGAATGTTGTGAGGGAGTGTGGTCGTGATGTCACCTGTCCCGATGCTAAAGAGGTCCTCTACACACTGAAAGAGAGGGCGTATGTAGAGCAAATTGAAAAAGCCTACAATTACGCCAGCAAGGTCCTTCTGGATTTCTTGATGCAGGAAAAGGAGCTGGTAACACGACTGCGGTCAATAAAGCACTATTTTTTAATGGACAAGGGGGACTTTTTTGTCCACTTTATGGACTTAACCGAGGAAGAGCTGAAAAAGCCGGTTGATGACATCATTCCCCCGAGGCTAGAAGCTCTACTGGAGCTGGCTTTGAGGATGAGCACTGCAAATACAGACCCATTCAAAGACGACTTAAAGATTGACTTGATGCCACATGATGTCATCACTCAATTGCTGCGGGTTCTAGCAATagaaacaaagcaagaaaaGTCTATCATCAATGCGGACCCAACCGAAATCTGTCTGAGTGGGCTGGAGGCGTTCTCTTTTGACTATATTGTTAAATGGCCGCTGTCACTTATTATCAACAGGAAAGCTTTGACCAGATATCAGATGCTGTTTCGCCACATGTTTTATTGTAAGCATGTGGAGAGACTTCTGTGCAATGTGTGGATCAgcaacaaaactgcaaaacaatatTCACTTCATTCTGCTAAATGGTTTGCTGCAGCTTTTACCCTGAGACAGCGTATGCTGAATTTTGTCCAGAATATACAGTACTACATGATGTTTGAAGTAATGGAACCAACATGGCATATCATGGAGAATAACCTGAAATTGGCTTCAAACATTGACGATGTGTTATGCCACCACACCAGCTTCCTGGATAACTGTCTGAAGGACTGCATGTTAACCAACCCTGAGCTTTTAAAGATCTTCTCTAAGctgatgtctgtgtgtgtgatgttcaCCAACTGCATGCAGAGGTTTACCCAGAGTATGAGAATGGACAGTGAGATGAGTCGTCTCACACTTGAACACGGAACGATGAGCGGCCCTCCAACGCAGAACGAACGCATCGAGGAGGCAGAGAAGAAAAAGCTCACTTCCAAGtatTTAGCTGAGCACGTTGATGCCCTGCAGTCTGCGGCCGGATTTGAGGCAACCATCAACAAGTTTGATAATAATTTCAGCACTCACTTACTGGACCTCTTGGACAAACTTAGTATTTACAGCACCAATGACTGTGAACACAGTATGATAAACATCATCTACCGGCTGGACTTCAATGGTTTCTACACAGAACGTCTGGAGCGCATGTCTACTGAAAGGAGTCAAAAGGCAGCTGCCTAGATGCAAATTAAATGCTCTTAGGCTCACTCTAGAgaagcacagcacactgcactcaCAGTGTATTAGATTCAGGACTTGGCCTTATGAAAAGATAacacattattaattcattatctCAATTCCAACACttacagaaagaagaaaagtcCTCACTAGGTGTTGTGAGAGAGCATGCTGTATTATTTGCTCTTGACGTTGAAGTGTGTGTACGTGTATCTAATGGAAAATGCCACCCTGGGTATGAATCATCTAGCAAGAGTGGACTTGAACATGAAAATGATGAGCCTTCTTTTCTTAACTAAGGGAGCAAATGCAGAGATTTATTGACTTGTATTTCCATTGCCAATACGGCATCCCTGGTGGAGgcgttattttaatttaaagaaatataaaacatgactACATTTTGTCCATACACGTGTTATATTGTCAAGCTCCAATATCTCACGGTTGTTAGATTAACAACGCCcagattttaaattagataGTTTGGTGGTTACCACAAAATGACCTCCGCCTAGGATGACAGTTGCAAACACGTTACTGGTGCTCCTCAGCTTACAAAGCATGTGAATAAATCTTGACATTTGAACATTTCTTTCAAACTCAAAGTGTATATATCGATAGGAGCAGGTTATCAATAAGTGTTGTCTTCCTTTAAAATTAGTATGATCATTGCGAGAATGTCTTCCTGTAGgatcagttttgatttgatcacaactctgttttatttcaaagttttattGTCATCTTTAACTGAATAAACAGTAAATACTCATATGAAAGGTAGCTTGTGTAAACCGTTTTCAGAAGTCTTTGATTAGAGAGTAGCGACCACTTGCTAGTCATCTGTttttaatgatgaaaataaCCTTCAGGGCACTTTActaaattgttattaaaataaatgttatataattCTACTGCAGAACTGTGCGC

Function

symbol description
tubgcp2 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin small complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP2 (tubulin gamma complex associated protein 2).
gcp2 gamma-tubulin complex component 2

NR:

description
PREDICTED: gamma-tubulin complex component 2 isoform X1

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16569 TUBGCP2, GCP2; gamma-tubulin complex component 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003010 True 3758 mRNA 0.44 18 9621880 9629686

Neighbor

gene id symbol gene type direction distance location
AMCG00003012 NA coding downstream 840 9607782 ~ 9621040 (-)
AMCG00003005 NA coding downstream 67213 9545998 ~ 9554667 (-)
AMCG00003004 vcl,LOC108426801 coding downstream 96987 9501245 ~ 9524893 (-)
AMCG00003003 LOC103355368,LOC107084594,LOC107666490,LOC107601874 coding downstream 181140 9434060 ~ 9440740 (-)
AMCG00003006 adka coding downstream 237878 9371373 ~ 9384002 (-)
AMCG00003016 NA coding upstream 8105 9637791 ~ 9638216 (-)
AMCG00003014 NA coding upstream 71949 9701635 ~ 9728640 (-)
AMCG00003013 echs1,LOC107601864,LOC107676592,LOC107743519,LOC107666378 coding upstream 106486 9736172 ~ 9739250 (-)
AMCG00003015 NA coding upstream 116643 9746329 ~ 9750513 (-)
AMCG00003011 NA coding upstream 121499 9751185 ~ 9758202 (-)
G140093 NA non-coding downstream 81327 9540344 ~ 9540553 (-)
G140016 NA non-coding downstream 378893 9237868 ~ 9242987 (-)
G140014 NA non-coding downstream 385578 9236022 ~ 9236302 (-)
G140009 znf503,LOC107708443,LOC101070189 non-coding downstream 465318 9150816 ~ 9156562 (-)
G140007 NA non-coding downstream 688911 8932770 ~ 8932969 (-)
G140174 NA non-coding upstream 110968 9740654 ~ 9740940 (-)
G140199 NA non-coding upstream 135967 9765653 ~ 9771507 (-)
G140217 NA non-coding upstream 219209 9848895 ~ 9853413 (-)
G140228 NA non-coding upstream 259472 9889158 ~ 9889626 (-)
G140279 NA non-coding upstream 406492 10036178 ~ 10037857 (-)
AMCG00003017 NA other downstream 14564 9596943 ~ 9607316 (-)
G140015 NA other downstream 384150 9236658 ~ 9237730 (-)
G140006 NA other downstream 774040 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 1127284 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 1683639 7931166 ~ 7938241 (-)
AMCG00003049 NA other upstream 672114 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1978777 11608463 ~ 11622649 (-)
G140758 NA other upstream 2011130 11640816 ~ 11647619 (-)
G140757 NA other upstream 2064320 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 3098552 12728238 ~ 12739807 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location