AMCG00003460


Basic Information

Item Value
gene id AMCG00003460
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4218169 ~ 4235652 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003460
TGGACATTGATCTGTGCTGACGGAAGGTGTATATGTGCCTATGTTCTTGCAGAGGATACAAGCAGTGCTGACTCGGGGGAGGACTGAGGGAGGACAGTGGTGGAGGAATACCAGTGGGGTGGTTTCACAATTTCCTTAGACGTTTATCAGAGATTGGTCCCCCAGTGAACTTCCCTTTCCATTTCACATATGTGGGATTTTATCAGTATCAGTTCAAACCCTGAAAAGTAATTCCAAGGCTGCTCTCCAAACAGAAACAACTCGATTTGTTCTTATACAGTTGTTTTCCAAAAGGATAGGGAAGAAGACTGAATAAAGATCAACTCACAAAAGTACTTTATTGGCCAGTCCCAGCATGCCCGTGTCCAGGCAGTGTGCAGCGCTGCTCATTGCAGTGGCTCTGCTGGCGGTGGAGCTCGGTGTGGGTCTGAGTGCAGATCTCCAGACAAACACCTGCTCTGGATACCCAGGAATCCCAGGGTCTCCTGGCAACATTGGAGCACCAGGGAGGGATGGGAGAGATGCGAAAGATGGCAGAGATGGAGGCCCTGGACagaaaggagaaaaaggagagaaagGTGAGAGAGTCCAGGGTCCTCCAGGGAAAGCTGGTCCCAACGGTCTATTAGGACCAAAAGGTGAAAAAGGTGAACGAGGATTTCAAGGTGAGAGGGGAGTCCAGGGTCCTCCAGGGAATGCTGGTCCCATTGGTCGATTAGGACCGAAAGGTGATAAAGGTGAACAAGGACTTCAAGgTGCAGCATTTGATCCCAACCTCATTGCTAAATTACAGTCACAGGTCCAGACACTTCAAAACAGTTTATCCAGACTTGAAAAAGctTCACAATTTCTACACTGGAAAAGAGTTGGCAATAAATACTTGGTGTCCAATAAAGAACTTGGAAATTTTGACAAAGGCTTAAAGATCTGTGGTGATGCTGGTGCAAGGATTGCCACACCGAGAAACAAAGTGGAGAATGATGTTCTTTCAAAGTTCCTTGCAGAGTCTCAGACAGCTTACATTGGAGCAAATGATAGGAAGAGTGAAGGACGATTTGTAGATTTAGAAGAGAAACCCCTTGGATTCACCAACTGGAAAAATGGTGAACCTAACaactataaaaacaaagaagacTGTTCCACAGTAGACCATAATGGACAGTGGAATGATGTACCTTGTGAATCAAATTGTATGATCATTTGtgagttttaaaaaatacaaatactgatgTCCACTGATATAATTTTCTTATCTACTGTAATAAACAAttgtatcaaaataaatcatagtcgtatctattttatttccatgtatcattgtaaaacatattttgtgcaTTGGGCTTTACAACATGTTTACAGCCATCAACAGCatttctggatgttttttgtaaaacagtTAAATCACATTCAAATTTATTGGACATTTGCTCATGAATAGAGACTACAAAATGTCAgatctttgaaaataatgaaattatgtGTGGAGGTGAAGAATACATTAGTAGTTTTCCTCTAGCCTGAATTCCAGATTATAAATAGTTTTCTGTTCTTGAATTGTCTGTATGTTAATTGTGTACTACAGCAAAGTTGATAGATTTAGACCTgttcatattgttttacattaactAGTCAGAAAAACATatagttgttttaatttgttgattaatttaattaattaattgactgtGTAGCAAAAAGAGCATTACAGTGCTGGTTTGATTCCTAAGTCATGAAATTTGATCACAAGTGATCTTTTCTGTAAGTGTAAGAATTAATTGAACCAATCAACCCACAAGACCCaacatatgtatttatcagAACCTTTAGATGTCCTcaacaaatattttgtgaaagtgAATGACTCAATATTGTTTGACATTTGGCTAATGATTAAATCTGAATTAGAC

Function

GO: NA

KEGG:

id description
K10068 SFTPD, SFTP4; pulmonary surfactant-associated protein D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003460 True 1910 mRNA 0.39 6 4218169 4235652

Neighbor

gene id symbol gene type direction distance location
AMCG00003464 NA coding downstream 6267 4209747 ~ 4211902 (-)
AMCG00003461 NA coding downstream 97790 4092092 ~ 4120379 (-)
AMCG00003451 NA coding downstream 362874 3853147 ~ 3855295 (-)
AMCG00003449 NA coding downstream 503929 3709113 ~ 3714240 (-)
AMCG00003443 NA coding downstream 682154 3466802 ~ 3536015 (-)
AMCG00003462 LOC108435005,LOC103398676,LOC105028620,LOC107697317 coding upstream 64253 4299905 ~ 4323978 (-)
AMCG00003466 snx17 coding upstream 141240 4376892 ~ 4404642 (-)
AMCG00003470 NA coding upstream 285896 4521548 ~ 4522998 (-)
AMCG00003472 NA coding upstream 311961 4547613 ~ 4553234 (-)
AMCG00003471 NA coding upstream 326749 4562401 ~ 4565560 (-)
G667 NA non-coding downstream 242180 3975757 ~ 3975989 (-)
G664 NA non-coding downstream 243459 3920996 ~ 3974710 (-)
G624 NA non-coding downstream 352740 3862997 ~ 3865429 (-)
G586 mtmr9 non-coding downstream 618580 3596921 ~ 3599589 (-)
G578 NA non-coding downstream 693074 3524024 ~ 3525095 (-)
G707 NA non-coding upstream 46173 4281825 ~ 4316284 (-)
G708 NA non-coding upstream 46497 4282149 ~ 4326850 (-)
G743 NA non-coding upstream 247864 4483516 ~ 4485565 (-)
G744 NA non-coding upstream 249955 4485607 ~ 4486026 (-)
G748 NA non-coding upstream 285163 4520815 ~ 4521017 (-)
AMCG00003459 NA other downstream 322645 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 679202 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 787897 3394657 ~ 3430272 (-)
AMCG00003422 NA other downstream 1779348 2427397 ~ 2438821 (-)
AMCG00003423 NA other downstream 1816274 2397642 ~ 2401895 (-)
AMCG00003476 NA other upstream 347490 4583142 ~ 4808989 (-)
AMCG00003484 NA other upstream 1108418 5344070 ~ 5356468 (-)
AMCG00003550 NA other upstream 4773465 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 5617547 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 5639018 9874670 ~ 9878444 (-)

Expression


Co-expression Network