AMCG00003535


Basic Information

Item Value
gene id AMCG00003535
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8819412 ~ 8842419 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003535
ATGGTGCAATGCGTGGTCCAGGGCTGCCCAAACAAATCCTACCCCAAAGCCGGGTTTGCAAACCGGCCTCGAAAGCGTTTCTTTAGCTTTCCCAAGGAGCAGGCCCGCGTTAAAGTATGGCTGGCCGCGCTGAGAGAAACGGAGCGAGTGCTGTCCGACCACCACCGGATCTGCGAGGACCACTTTCTGAAGCACCACATCACTCCGTTTGGAGTAACTAAAGACGCGATCCCCATCATGCCCCTGTATCTGGACGGGCCCCTGTCCTCCAGTGCTGGAGCCGACTTCGACGAGGCAGACGAATTATCTGCTGAGGCGGAAATGGAGCACGAGGAGAGCTTCGACAAAGATGCAGAGGATTTCTCATTAAACTGGGAAGCCGAGCAACCTGAGGCCTCTGCAGAGGAGATCCTGGAGCACAGCAGTGCTCCTGTGCAGAAACTGGGCAGTCCCAGACACACGGGCGAGCAGCAGCATTTCAATCCGCGGCGGGGGGCGGATTTGGGATCCGCATCTTCAGACCCCATTTCAACCATGGATGATGATTTCCTGGAAAGGAGTTTTGTGGAAAAAGAGTTTGTGCATGCTGCCATTCCCGCCGTCTCCCCGTTCAGCTTACTGAAGATCGTTCTATGCCCTTGGTCTTTTCCAGAAGAAGCCACCAAGCTCCGCTGTGACGTCTCCCTGGTCTACCTCACCAAAAAGTTCATGGAGCTCATTCAGGTGGCTCCAGATGGCATTCTGGACCTGAACAATGTAGCACGGACATTAGGAGTGCGCAAGAGAAGAGTCTACGATATCACCAATGTTCTGGATGGCATTCAGCTGATTCAAAAGCGCAGCAAGAACCAAATTCAATGGGTTGGATCAAACCTGAACTTTTTGACTCAAGTGGACACAAAGCAGCAGAAGCTGAAAGATGAACTGCTGGATTTAACAGCAATGGAAGAAGCCTTGGACGAGTTAATCAAAGACTGTGCTCACCAGCTGTTTGAATTAACCGACCAccaagaaaatgcaaaatatccTTTTATCTCGCAGCATTTGGATACTTCAGCCTATGTGACTCACAGGGATATCCGCAAGATCCAGGCCTTCCAGGAGCAGACGGTTTTTGCCATCAAAGCTCCAGAGGAAACCAAGCTGGAGGTTCCTGTGCCTAAGGAGGACAGTATTCAGATCCACCTGAAGGGATCCAAGGGGCCCATCACCGTGCTGCTGTGCTCAACCAACAGCCTAGCGGACTCTGACCAGGGGGCTGAAGATGGAGGGTCTTTCTCTACTCTGGAGAGCAGCTGCATATATACTGAGCCACTGCATACAGTCACCCGCCAgCTCAGGGGGATTCACATTCAGCTTCGGTAG

Function

GO: NA

KEGG:

id description
K09390 E2F6; transcription factor E2F6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003535 True 1365 mRNA 0.52 10 8819412 8842419

Neighbor

gene id symbol gene type direction distance location
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding upstream 481762 8317038 ~ 8337650 (+)
AMCG00003532 rsad2 coding upstream 527194 8284827 ~ 8292218 (+)
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding upstream 839215 7978775 ~ 7980197 (+)
AMCG00003526 NA coding upstream 1271858 7532553 ~ 7547554 (+)
AMCG00003525 NA coding upstream 1288287 7518051 ~ 7531125 (+)
AMCG00003542 itgb1bp1 coding downstream 115722 8958141 ~ 8959534 (+)
AMCG00003539 cpsf3 coding downstream 123292 8965711 ~ 8977843 (+)
AMCG00003540 NA coding downstream 137181 8979600 ~ 8982021 (+)
AMCG00003545 grhl1 coding downstream 267422 9109841 ~ 9131160 (+)
AMCG00003543 NA coding downstream 298125 9140544 ~ 9144958 (+)
G1347 NA non-coding upstream 118858 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 152485 8661032 ~ 8666927 (+)
G1303 NA non-coding upstream 375388 8443740 ~ 8444024 (+)
G1291 NA non-coding upstream 478820 8340266 ~ 8340592 (+)
G1271 NA non-coding upstream 542429 8275762 ~ 8276983 (+)
G1375 NA non-coding downstream 1408 8843827 ~ 8844082 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding downstream 166878 9009297 ~ 9027632 (+)
G1574 NA non-coding downstream 858138 9700557 ~ 9703478 (+)
G1706 NA non-coding downstream 1394437 10236856 ~ 10238261 (+)
G1747 ralgapa2 non-coding downstream 1589245 10431664 ~ 10457765 (+)
AMCG00003534 id2,LOC106566577 other upstream 166942 8649125 ~ 8652470 (+)
AMCG00003524 rps7,LOC107668222 other upstream 1315397 7498040 ~ 7504015 (+)
G1012 NA other upstream 2324507 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 3484660 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 4297012 4514031 ~ 4522400 (+)
AMCG00003541 asap2,LOC106566627 other downstream 58037 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 233471 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 413409 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 935089 9777508 ~ 9781756 (+)
AMCG00003604 NA other downstream 2619244 11461663 ~ 11482931 (+)

Expression


Co-expression Network