AMCG00003678 (LOC108270052,LOC107665105,LOC107729283,LOC108428681,LOC107589599)


Basic Information

Item Value
gene id AMCG00003678
gene name LOC108270052,LOC107665105,LOC107729283,LOC108428681,LOC107589599
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14408429 ~ 14416083 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003678
CCCTTCCATCCCATGGTGAACCTGCAATGCTCTCCAGACCTGCGGCCCTTCCTGTGTGCGCTGTATGCCCCCGTGTGCTACGAGTACGGGCGCGTCTCCCTGCCCTGCCGCCGCCTGTGCCAGCGCGCCCACCGCGACTGCCACAAACTCATGGAGATGTTTGGGGTGACCTGGCCAGAAGAGATGGAGTGTAGCAGGTTCCCAGACTGCGATGAGTCTTACCCCCGTCCTGTGGACCTGCTGTCCAGTCTGGATGGCACTGAGGAGTCCCCCATGGCCGTCCAGAGAGACTATGGCTTCTGGTGCCCCCGCGAGCTGAAGATCGAGCCGGACCTGAGCTACTCCTTCCTGGGGGTGCGTGACTGCTCCCCGCCCTGTCCCAACATGTACTTCCGGCGGGAGGAGCTCTCCTTCGCACGCTACTTCATCGGCGTCATCTCCATCGTGTGCCTGTCGGCCACACTCTTCACCTTCCTCACCTTCCTCATTGACGTCACGCGCTTCCGCTACCCTGAGCGGCCCATCATCTTCTACGCCGTCTGCTACATGATGGTGTCCCTGGTCTTCTTCCTGGGCTTCCTGCTCGAGGACCGGGTGGCCTGCAATGCCGCCAGCCCCGGCCACTACAAGGCTGCCACCGTCACGCAGGGCTCCCACAACAAGGCTTGCACGCTGCTCTTCATGGTGCTCTACTTCTTCACCATGGCTGGAAGCGTGTGGTGGGTCATCCTCACCATCACCTGGTTCCTGGCCGCTGTGCCCAAGTGGGGTAGCGAGGCCATCGAGAAGAAGGCACTCCTGTTCCACGCCAGTGCCTGGGGCATCCCGGGCACGCTCACGGTCGTGCTGCTGGCCATGAACAAGATCGAGGGCGACAATGTGAGCGGCGTCTGCTTCGTGGGGCTGTATGACGTGGACGCGCTGCGCTACTTCGTCCTGGCGCCGCTCTGCCTGGACGTGCTGGTGGGCGTTTCGCTGCTGCTGGCTGGCATCGTGTCCCTGAACCGTGTGCGCATCGAGATCCCCCTAGAGAAGGAGAACCAGGACAAGCTGGTGAAGTTCATGATCCGCATCGGGGTGTTCAGCGTGCTCTACCTGGTGCCCCTGCTCATTGTCATTGGGTGCTACTTCTACGAGCAGAGCTACCGGTCCGTCTGGGAGACCACCTGGGTGCAGGAGCGCTGCCGGGACTACCACATCCCCTGCCCTTACCAGGTCACCCAAACTAGCCGTCCAGACCTGATCCTCTTCCTCATGAAGTACCTGATGGCGCTGGTGGTGGGCATCCCGTCTGTGTTCTGGGTGGGCAGCAAGAAGACCTGCTTCGAGTGGGCCAGCTTCTTCCACGGCCGGCGCAGGAAAGACAGCGCGGTGAACGAGAGCAGGCAGGTACTGCAGGAGCCGGACTTCGCCCAGTCTCTGCTCCGAGACCCCAACACCCCGATCATTCGCAAGTCCAGGGGCACCTCCACCCAGGGCACCTCCACCCACGCCTCCTCCACCCACCTGGCAATGCTGGACGACCAGCGCAGCAAAGCGGGCAGCGCTGCCTGTGTTAAACCTCTGATAATAAGACCTGTGTGCTTCCTCGCCCCTGCCAGGTACACCCCTTGCAGTTACAGGGGAGTTGATGACAGGCTGCCGCACGGGAGCATGTCCCGGCTAAACGACCAGTCGCGGCACAGCAGCATGCACCGCCTCAACGACCAGTCACGGCACAGCAGCGTCCGAGACCTGAGCAACGCCCCTCCCCCGCATGCCACGCACATCACGCACGGCACCAGCATGAACCGCGTCATCGAGGAGGACGGAGCCAGCGCCTGA

Function

NR:

description
PREDICTED: frizzled-3-like isoform X1

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007199 G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger biological_process
GO:0001736 establishment of planar polarity biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0001843 neural tube closure biological_process
GO:0071679 commissural neuron axon guidance biological_process
GO:0033278 cell proliferation in midbrain biological_process
GO:0001944 vasculature development biological_process
GO:0021754 facial nucleus development biological_process
GO:0032589 neuron projection membrane cellular_component
GO:0030424 axon cellular_component
GO:0030425 dendrite cellular_component
GO:0048786 presynaptic active zone cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0045177 apical part of cell cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02329 FZD3; frizzled 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003678 True 1824 mRNA 0.63 5 14408429 14416083

Neighbor

gene id symbol gene type direction distance location
AMCG00003680 NA coding upstream 19879 14385138 ~ 14388550 (+)
AMCG00003679 nrbp1,LOC103372645 coding upstream 25837 14366316 ~ 14382592 (+)
AMCG00003674 NA coding upstream 72760 14329530 ~ 14335669 (+)
AMCG00003672 NA coding upstream 79744 14299567 ~ 14328685 (+)
AMCG00003671 NA coding upstream 115666 14233934 ~ 14292763 (+)
AMCG00003683 NA coding downstream 124461 14540544 ~ 14548128 (+)
AMCG00003681 NA coding downstream 139907 14555990 ~ 14558193 (+)
AMCG00003682 NA coding downstream 148445 14564528 ~ 14580910 (+)
AMCG00003688 NA coding downstream 191903 14607986 ~ 14617192 (+)
AMCG00003691 NA coding downstream 580814 14996897 ~ 15005277 (+)
G2380 NA non-coding upstream 329102 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 867275 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 893364 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 895431 13512600 ~ 13512998 (+)
G2332 NA non-coding upstream 895898 13512194 ~ 13512531 (+)
G2446 NA non-coding downstream 4648 14420731 ~ 14421310 (+)
G2517 NA non-coding downstream 590263 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 698546 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 699622 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 712513 15128596 ~ 15130200 (+)
AMCG00003655 xdh other upstream 1201590 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 1365832 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 1491427 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 2678438 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 2831100 11573731 ~ 11577329 (+)
G2440 NA other downstream 2433 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 435669 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 884997 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 1608788 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 2616487 17032570 ~ 17042594 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_10330659_10345549 FZD3A, FZD3 coding CI01000325 null 10330659 ~ 10345549 (-)