AMCG00003720 (mcm3)


Basic Information

Item Value
gene id AMCG00003720
gene name mcm3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16258454 ~ 16265698 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003720
CGCCCGTCCGCCGTGCTCGTCTCTGGCGGGAAAACGCTGCAGTTTCGCAGAGGAGAAGGTGGAAGCAGCTCCACATGTGCACACGGTTGGCCAGATTGAATTGATACAagttaaaacttaatttaagaTCTGATTACCAGAATGGCTACCGAAGTCGTAGATGACCGAGAGATGCGAGAGGCGCAGAGGGATTATTTGGATTTTCTGGACGATGACCAAGACCAGGGCATCTACCAGAGCAAAGTGCGAGACATGATCAGCGACAACAAGTGCCGACTGATTGTCAACATCAACGACCTGCGGAGGAGGAACGAGAGCCGAGCCGCGCGGCTGCTGAACAGTGCCTTTGAGGAGCTCCTGGCCTTCCAGCGTGCCTTGAAGGACCTGGTGGCCTCCGTGGATGCCACCTATGCCAAGCAACACGAGGAGTTCTTTGTGGGCCTGGAAGGCAGCTTCGGCAACAAGCACGTCACCCCCCGCACCCTCACCTCTCGCCTGCTGGGCAGAGCCGTCTGTGTGGAGGGCATCGTGACCAAGTGCTCGCTGGTTCGACCCAAGGTTGTCCGCAGCGTCCACTACTGTCCAGCCACACAGAAGACCATGGAGCGGAAATACAGCGACCTGACGTCTCTGGAGCCTTTCCCGTCCAGCTCCATCTACCCCACCAAGGACGAGGAGAACAATCCCTTGGAGACGGAGTTCGGCCTGTCCATCTACAAGGACCATCAGACCATCACCATCCAGGAGATGCCCGAGAAGGCGCCGGCCGGCCAGCTGCCTCGCTCGGTGGACATCGTTCTGGACAATGATCTGGTGGACAAGGTCAAGCCCGGGGACAGAGTCCAGGTGATCGGCACCTATCGCTGCCTGCCGAGCAAGAAAGGGGGCTACACCTCGGGGAACTTCAGGACTATCATGATCGCCTGCCATGTGAAACAGATGAGCAAAGAGGTGTCTCCATTCTTCTCTGCGGACGACGTGGCCAAAATTAAGAAGTTCAGCCAATCTCGCTCCAAGGATGTCTTCAGCCAGCTGGCCCGCTCCTTGGCTCCCAGCATCCACGGCCACGAGTACATCAAGAAGGCCATCCTGTGCCTGCTGCTGGGGGGGGTGGAGAAGGTGCTGGAGAACGGCTCTCGAATCCGCGGCGACATCAACGTGCTGCTCATAGGGGACCCCTCGGTGGCCAAGTCCCAGCTCCTGCGCTACGTCCTCCACACCGCACCCCGTGCCATCCCCACCACGGGCCGGGGTTCCTCTGGGGTGGGCCTGACTGCCGCCGTCACCACAGACCAAGAGACCGGCGAGCGGCGGCTGGAGGCGGGCGCCATGGTGTTGGGCGACAGGGGCGTGGTCTGCATCGACGAGTTCGACAAGATGTCCGACATGGATCGTACAGCCATCCATGAGGTGATGGAGCAGGGCCGCGTCACCATTGCCAAGGCCGGCATCCACGCCCGGCTCAACGCACGCTGCAGCGTCCTCGCCGCCGCCAACCCCGTCTACGGCCGGTATGACCAGTACAAAACCCCCATGGAGAACATCGGGCTGCAGGACTCTCTGCTCTCCCGATTCGACCTCCTCTTCATCATGCTGGACCAGATGGACCCTGAGCTGGACCGTGAGATCTCCGACCACGTGCTCCGTATGCACCGGTACCGGAACCCGGGAGAGCAGGATGGAGCAGCGCTGTCCTTGGGAGGTTCTGTGGACATCCTGGCCACCGATGACCCCAATGTGAcccaggaagaggaagaggagctgCAGGTGTATGAGAAGCACAACAACCTGCTTCACGGGACCAAGCGCCGCAGGGAGAAGATCGTGAGCATGGAGTTTATGAGGAAGTACATCCACGTGGCAAAGGTCATCACCCCCGTGCTGACCCAGGAAGCAGCCAATCACATAGCGGAAGAGTACTCCCGCCTGCGCAGCCAGGAGCAGATGAGCCCCGACGTGGCCCGGACCTCTCCAGTGACGGCCCGAACGTTGGAGACCCTGATCCGATTGTCCACAGCCCACGCCAAGGCCAGGATGAGCAAAGCCATTGACCTGGAGGATGCCGAGGTGGCTGTGGAGCTGGTGCAGTTTGCCTACTTCAAGAAGGTTctggagaaagagaagaaacgCAGCAGGCCGGAGGAAAGAGACACTGAGTCCGAGGTCGAGGAGGATGAAGAGGGACAGGCTTCTCCCAAGCAAAAGAAGAAGAGAAGCCGCAAAAGCGCCGAGAGCCACCCCTCCACACAGAGCAGCGAACCCTATGACCCCTACGATTTTACTGGTGAAGGGGATGTCCCTGAAGTTCAAGCCCACACTCCCAAGGCCAGAGAAGAGCCAATGGAGGTGGCGGAAGCTGCAGGACTCTCCTCTGACAGGCTGAAGGAGTTCAAGGCGGCACTGCTGGAAGTGTTCAAGGCGGCCCACGCTCAGTCCATCAGCATGCGGAGCCTGATGGACGCCATAAACAAGGGCAGCTCGGCACCCTTCACCCAGCAGGAAGTGAGCGCTGCCCTTGATCGCATGCAGGACGACAACCAGGTCATGCTCTCCAATGACATCATCTTCCTCATCTGACAGCGCGAGGGCAGCAGTGAGTGCGAGTAAAGCACCAAGCGAGAGGAAGCGCATTTGACGACCTGCATTTCAGAGTGGGCTTTCCTCAGTTGAGTCTTGTTGTGTCCATTGAGGCCTGGACTCGGGTTTGGGCTTCTTAAGGCAACCCCGCTCCTCTGTTCCTTACGGGGGGaaacccattttattttattttattttttcaagtcagaagccagcgtattttaattgttttatttttaatttgatctccAAACAGTGTTTAAGTTATAACTCATAGTCTTGCTGTTTCCCAATCTTTAAATCATAACAGGCAGAATAATAACATCACTCTGGCTCTTGCCATTCTGCACTAAAGCATTTACTGAGAATTCACCAGCCAAGCTTACAGACTCTGTATGTGCCTTTCACCTCACAGACTTGCATACAGTTCAAGTTGATCTAAGGACACAGTaccttttggttttgtttttgagatttttttgtaaatgtaaaaaaagtgaaagaaatgtaaatatttgtacctctgctttaaaatgttttcaagtgTCTTCAAAAAGGAGAGAAAGCTGTAATGCTTCTCtcagaaatctaaaataatttgcttcTGTTGCAGACAGACAAGTTTGGATTAAACCTGATTTTCTATAA

Function

symbol description
mcm3 Enables chromatin binding activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in chromosome. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; blood; immature eye; nervous system; and pectoral fin musculature. Orthologous to human MCM3 (minichromosome maintenance complex component 3).

NR:

description
DNA replication licensing factor MCM3

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02541 MCM3; DNA replication licensing factor MCM3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003720 True 3225 mRNA 0.55 17 16258454 16265698

Neighbor

gene id symbol gene type direction distance location
AMCG00003718 NA coding upstream 48177 16207847 ~ 16210277 (+)
AMCG00003715 elp3,LOC107696156,LOC107698368,LOC107599080 coding upstream 97372 16136846 ~ 16161082 (+)
AMCG00003713 NA coding upstream 179139 16071552 ~ 16079315 (+)
AMCG00003711 NA coding upstream 506593 15726442 ~ 15751861 (+)
AMCG00003706 NA coding upstream 860048 15394813 ~ 15398406 (+)
AMCG00003719 NA coding downstream 21964 16287662 ~ 16288702 (+)
AMCG00003727 NA coding downstream 149752 16415450 ~ 16427708 (+)
AMCG00003730 snap25,snap25a,LOC107698362,LOC107719097,LOC102796069,LOC103398514,LOC107599071 coding downstream 252408 16518106 ~ 16522586 (+)
AMCG00003729 NA coding downstream 281374 16547072 ~ 16569703 (+)
AMCG00003733 kif28p coding downstream 310690 16576388 ~ 16589499 (+)
G2755 NA non-coding upstream 26956 16229935 ~ 16231498 (+)
G2721 NA non-coding upstream 172462 16085140 ~ 16085992 (+)
G2719 NA non-coding upstream 173588 16081182 ~ 16084866 (+)
G2698 NA non-coding upstream 225519 16032708 ~ 16032935 (+)
G2681 NA non-coding upstream 353634 15904483 ~ 15904820 (+)
G2797 NA non-coding downstream 163336 16429034 ~ 16430555 (+)
G2833 NA non-coding downstream 327566 16593264 ~ 16597369 (+)
G2836 NA non-coding downstream 333360 16599058 ~ 16599329 (+)
G2861 NA non-coding downstream 602601 16868299 ~ 16934020 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding downstream 942337 17208035 ~ 17210041 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 218814 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 940226 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 1391696 14851752 ~ 14866758 (+)
G2440 NA other upstream 1838722 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 3051615 13155060 ~ 13206839 (+)
AMCG00003744 NA other downstream 766872 17032570 ~ 17042594 (+)
G3047 NA other downstream 1416119 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 1866221 18131919 ~ 18142633 (+)
G3108 NA other downstream 1880962 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 3006267 19271965 ~ 19397686 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017477 mcm3 coding NC_007131.7 CM002904.2 34770197 ~ 34783743 (+)