AMCG00004304


Basic Information

Item Value
gene id AMCG00004304
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42210430 ~ 42216362 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004304
CCGACTCGCCCCGGACCCGGACCCCCGACACGGACCCCGGACCCGGACCCGGACCCCCGACACGGACAACTCCACCTCCACAGGGCAGCGGTTGAGTTACTTTGAATCGTGTTGTTTGCCCTTTCAGGTATGTCTCACAGAGGCGTCGGCACTCTGGTCAGCCACAGCAGTGCCACCTACACCCCCCCTGCCCTGATGCCCGGGTACTGTGGCCATGTACCCACCGTTAAGTTTTCCTTTGGCGACACGTTTGGGAATGCTACCATGAGACACTTCCAGGATTTCCGTAGTGCTGTCCTGGAGTCCAGCAAGAGCCCTTACAGCTCCGGAGGCCAGTTCCCCACAGTCTACTCCCACAATCCCTCACTAGTGACAGCCTGCAGGTCTCGCAGTCGAGACAGAGCCCTGCTCACCCCGTACTGGTCCAGGCACAATGTGGATCTCAGCCGCCAGGAGGAACTCAAAAAGTTTGAAAAGCTTGCCCAGAATCACAGGGATGCTTACAAGGACACGACAGGAACCCTGCAGCCAGTGAAATACTTCATTCAACCAGTTAAGGAAAGCGAAAGATTCCCACAGAAGATTATGTAAGAATGCCAGTCTTCATTAAAAgtcagcacaaacaaacaagaaagaaaattacaaagaCCAAAAACATGCAGCTAAATTGTGTCTTCCTCAAAATGTGTCCATCAGTGGCTGTTGAGTTGCAACAAAGTCTAATATGAAGCTTGATTAGTTACATTTAAATGGttaatcattatatattatttaagtcAAAATGCTATTGTGGAGttgtggtcagggctctggagttctgagcagagggttgtgggttcaatcccaggtgactgactctgctgttgtacccttgagcaaggcactgtacctagatcgctccagtacaaacccagctgtataaaagggtaattgtatgtaaaaaataatttgatctaTTTTAACAATTGCTCAACAACAAAGTCACTCTAGATAAgggctaagaaatataataataaaatgtatttaaatatatattgtgcctGTGGCTCTTGTTGGATGACATGCCACAAGGATCACAGCTTTTTTCACAGTATTACTTACTGACTTTGggaaaagctttttatttttttattttttgtgtttaataaatgttcccttttTCGCTTTCTTGTGATAATGGCGTTTGGTCTTCAGGTTTGTAAATTAGCCTGTAGGCCCGTGGTCAATTACAAATTAGTTGTGTTGACACTGACATGAATGCAATCACACTCATGAACAAAGATGAGTACAAGTGCAagacaagattattatttttactgtaaaattACCCTCCAGTCAAAAACGACTTCTTCTGAATATTTGTGCTATAAATGGGTTCTTGGTGTGACATTCGCTTCCTTTCATGTCAACAGAAGTAGCCGTTTGCTCCAACAAAGTGTTTTCTTCCTGCTTTGCCCTTCTGCATTGTAGTGGCCTGCTCACATTCCTCAAAAAGCTTTCCTGTCTTTTAATTTGCTAGTGGCGAACATGTCAGTGTAAGAAGAAggaccattttaaaatgtagtccttggctcaatatatatatatatatatttatagatctCAAAATGCAGCCAGTTTCATACAGG
>TU8899
AggttattcaattattttggttGCTTCTCGTCCCTTCCTCTTCACAGGTACTGTGGCCATGTACCCACCGTTAAGTTTTCCTTTGGCGACACGTTTGGGAATGCTACCATGAGACACTTCCAGGATTTCCGTAGTGCTGTCCTGGAGTCCAGCAAGAGCCCTTACAGCTCCGGAGGCCAGTTCCCCACAGTCTACTCCCACAATCCCTCACTAGTGACAGCCTGCAGGTCTCGCAGTCGAGACAGAGCCCTGCTCACCCCGTACTGGTCCAGGCACAATGTGGATCTCAGCCGCCAGGAGGAACTCAAAAAGTTTGAAAAGCTTGCCCAGAATCACAGGGATGCTTACAAGGACACGACAGGAACCCTGCAGCCAGTGAAATACTTCATTCAACCAGTTAAGGAAAGCGAAAGATTCCCACAGAAGATTATAGATCAACCCTCTGAGAAGAAGTGCATGACCTCCTGCCCAGCTCTGTTACTGGGAGCACGGAGGTACCAGACCTTCACGTCGGGCCTGAGGACGTCCCAAAGTGACCGGAAAACGAGGGACATGTTCTTTGAGAGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004304 True 1628 mRNA 0.44 3 42210430 42214749
TU8899 False 569 TUCP 0.52 3 42212510 42216362

Neighbor

gene id symbol gene type direction distance location
AMCG00004303 NA coding upstream 112108 42089871 ~ 42098322 (+)
AMCG00004300 NA coding upstream 126588 42069528 ~ 42083842 (+)
AMCG00004301 NA coding upstream 145019 42047643 ~ 42065411 (+)
AMCG00004298 LOC104961504,LOC106608390 coding upstream 165339 42029377 ~ 42045091 (+)
AMCG00004299 mapre3b,LOC107392001,LOC100704238 coding upstream 185690 42010685 ~ 42024740 (+)
AMCG00004305 NA coding downstream 3658 42220020 ~ 42259741 (+)
AMCG00004309 wtap,LOC105015380,LOC100196682 coding downstream 122152 42338514 ~ 42347082 (+)
AMCG00004308 acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057 coding downstream 133869 42350231 ~ 42355400 (+)
AMCG00004314 NA coding downstream 331978 42548340 ~ 42576558 (+)
AMCG00004315 NA coding downstream 375504 42591866 ~ 42634968 (+)
G7231 NA non-coding upstream 120777 42087791 ~ 42089653 (+)
G7221 NA non-coding upstream 142705 42065497 ~ 42067725 (+)
G7182 NA non-coding upstream 244197 41966014 ~ 41966233 (+)
G7101 NA non-coding upstream 603671 41605110 ~ 41606759 (+)
G7102 NA non-coding upstream 681122 41523053 ~ 41529308 (+)
G7272 sod2,LOC102787761 non-coding downstream 117063 42333425 ~ 42336643 (+)
G7278 NA non-coding downstream 148506 42364868 ~ 42365654 (+)
G7288 NA non-coding downstream 160263 42376625 ~ 42379961 (+)
G7293 NA non-coding downstream 259214 42475576 ~ 42475886 (+)
G7418 NA non-coding downstream 1019456 43235818 ~ 43237653 (+)
G7094 NA other upstream 703199 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1869195 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4362710 37832623 ~ 37847720 (+)
G6369 NA other upstream 5210272 36999357 ~ 37000158 (+)
G6328 NA other upstream 5318684 36861547 ~ 36891746 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 472417 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2401823 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3745648 45962010 ~ 45968306 (+)
G7999 NA other downstream 5930526 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 6680755 48897117 ~ 49026355 (+)

Expression


Co-expression Network