AMCG00004305


Basic Information

Item Value
gene id AMCG00004305
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42220020 ~ 42259741 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004305
CAGGGATGAAAGATGTGGCTCTCCTCGCAGCAGCTAATGCACTCTGCTGAGACTGCCTGGGTCTCCTTTACTGTAGCACTGAACTAACAGATTCTCAAGCTATCTACAATGGCTCCAACGACAGTAAGGACTCTCTGCGCCCTTTTCATCCCACTTCTTGCTCTCAGCTCCACAGTGAAAGCCAACCGCCCCCAGAGGCCGAGGAATGTGAAGCTGCTGCCCACTGATAAGGGCCTGAAGGTGACATGGGACCCTCCAACAGACTCTGACACAAGGCCCGTTGGGCACTACAATATCGGCTATGGGACATCAATGAAGACTCTGCGCTACATTAAAGTGGATAAAAATAGTCAATCCCAAATACTGGAGGATGTAGAGGCTggtgttttgcactttttgaAGATGACAGCTGAGAATGACGATGGACTGAGCCAGCCAGTGTACAGAGCGGAGACACCTCAAGAAACGATCAAGGCAGCCCCTGCTGAGGACAGTGCGTCCTTGCGACCAAGACCCCCAGCTTCATCAGGACCACGGCAGCCAGACAGAGTGAGAGGAAGCATTCTGAGAGTCCCTCAAAATGACAGGAGAATGGATTATATGTCTTTACGAGAGAATCGAAGATCTCACGAAACTCGAAAACTTGCATCTGAGTCGGTGTATGTGGTATCACTGCAGGCACAGAAAGCACTCGGGCAGAGCTCACCTGTACACAGGCCGCTTGTGACCAAAAAAAAGATATCAGATCCTGAAGAAGTGTACGAGGCAAAGGATATCACTGTTCGAGTCATGTCTCCTCAGTCAGTCTTTGTTTCCTGGATGGATCCTGCCATTGAGAAAGAGAAGGATGTGAGCGGATCCTCATCAAGGCACTATTCTGTCCGCTACCGAGAGAAGGGAGAGTCAGCGAGGTGGGACTACAGAGAGACCACTCAGCGAAGAGTGCTGATAGACTCCCTCTCTGCCGACAACATGTACGAGTTTTCGGTGAGGATTTCACAGGGAGAGACTGATGGCAAATGGAGTGTGTCGGTTTTTCAGAGGACTCCTGAATCTGCCCCTTCTGGTCCACCAGAGAACTTTCTAGTCAAGCCATTGCGAGGTAAAGGTACCGCTGTCACCGCGACCTGGGACCTTCCACAGGAGACCAATGGTAGAATAAGAGAATACATCCTTTCGTACGCCCCCGCCCTCAAACCCTTCGGCTCAAAGTCTATGACCTATCCGGGGACGAAGACCTCTGCCATAGTGGAGGGCCTGCAGCCTGGGGACcgctacattttcaaaattcgTGCAGCAAACAGGAGAGGACAAGGCCCTCAGTCTAAGGCTTTCAGCGTGGTTATGCCAGGAACTAGCACTGTTGCTTCAGCATCATCTCAAGACTCCAAGGTCCCTAACAGTCACAAGAGGGGTCAAAGTTCTTCTAGGACATCTTCATCTTCAGTATCTTCTTCACAATTACAAACTGATTCTGCAGCTCGGGGAGGCTCTGATCCTCAGTCGGCAGAAGAAGACAAAGAAGCTGATCCACTAACGCCAACACATTCCTCCCCGTCTAGAAAAGTCCTTCCCCTTTTCCCATCTAGATCATACCACAGCATATTATCTTCTGTACGATCTCCTGTTAGGAACAGCGCTAACACTAAAACAACAGGCACGAGTTCACCTTCACTTCAAGATAAAGACAACGAAACAAAAGATTTAAATGGACAAAAACCGAACGCAGAAATTTCAAAAGCTCCTGATTCATATGAGGATTTGGAGGAAGAGCAGAAAGAAGATATAGAGGTGAAACTTGTTGTGCCTTCAAAAACTGTGGATAGTGACTCTCATGAAGGTGCACACAACAAGCATTCCATTCCCGTTATAGATCTCAGCCCTTATGATTCTAGTCTCGATTCCTCATCATCCAAAACATCCTCTGGATCACTGCCAAGAAACCCAGCAAGCAGGTCTTTCTCCCCTGTTCAAAACCCACACACATCTGCTAACACGGAGACTAAACAAATTCGAAGACCTAGTTCCTTGCCCATTAGAATATCTCAGTCTCCTACACCTAAGGTAGACCCCTCTTCCACTTTGTCTAACAGCCACACTGATAGCTCGCATCTCAGTAGAAAGGAACCAGTTGAGcacaagacagaaaaaatacattcatccCCTTCATCCAGGCACTCTTCATTTTCTAAACCAGATAGGTCTTCTGTGCCATCTTCAGGAAGTGCACGAGCGTCTGTTCCAGCAACTCGTCATGCTAGTTCTGGTGGTCACTCCAGAGGTAGTTCCACTGAAATAACAGGCTTAGTCCAGTCACAAACTGTTCCAAATGAAAGTGGATCTAGCAGGGTTTTAACCAGTCAACTAAAACCTAGTTCTTCTGCAACTGTAGCTCAGTCGACATTGCCAATAAGTGCCCAGAACCCTAGAGGAAGGGCCCAATCATCACACAGTGAGCACTTGTCGCAATCAGTGGAGagtgatgatgattatgaagatACTGAGACTAAAGCTCAGGAGGAGAAGCCAAAGCCGTCAACAAAAACAACCTCCTCCTTGTCACCCGCTGCTTCTACACCTGTTCACCACGATGGCACCCAAAACTCTCATCTTGGTAGTAAATCAATTATTCCAGAGAATAAGCGTACACTAATGCCATCAAAATCTCTTACTTCTGGGAGTGCCcgtttaccttttttaaatcGCAATCATAGGCTGAACGtgcaaaacagacagaaaacaaaggcAAGCTTGTCATCTGGTCAGCATAACACTCCAACACATTCAATAGCATCTCGCACAGCAGCCCCAAAAACAGTACAACATTCTGCAGCTTCCATGAGCCAAGAGACGGACGAACATGTGAAAATCCCCATGTCTGCATTCCCTGCGAAGCCTGCGTCCTCTGGTTCTTCAGAGTCTCTGGTGCCAATCCAACATTCAGTTTCAAGTGGCTCTACAAATCCGGTGTCCTCCTCTCATACCAGTTCTGTACTTCCATCCAAGGGACACTCTGACTCACTCAATAAACCTGACCTTGAGAAGCCTGCCTCCCCAggtgatgaagatgatgattataattatgattatcatGAAAGCACGGAGCTATATGgtaaagatggaaaacaagttCCAGAAGCAGAGGTGCCACGGGTTCCTACCTCATCTTTAAGCAAACCTCAGAAGCCATTGCCAGGCAGTACTCACAACACTGAGAGAGACATCAGTCATGGCAGAACCGGTTCATCTTCTGTCCCATCAGTCAACCATCGGGCCGCTGGAGGTTCTAATGGACGACCTCGGACTCTTGTACCAACAAATAGACATATTGGTCCTAGATATTCTGACAGGTCACTTCCCTCAGAACATGCAAAGGTAGGCTCCTCCAATCCTGTCGTCGCATCGTCAGGTTTGCCATCATCTTCGAGTTTTGCACAGCCAGCTGTTGCTCCAGCTCGAGGCAGGATCTCAAATGGAGGATCTCCCCATGTTGCATCATCTCAGTTGCCTCGCTCATCTTCCAGGCTTACCTCTAGTGAGAGACTACACACTGCTTCTTCCTTAGTACCAAACTCTTCTCCATCCCAGACCTCATCTGCCTCTCAACCCGCTCTGCCCTCAACTCGGAATAATGGATCAAAGAAACGCATTTCTAGTCACATGGATAGTGCTGCACGAGCAAAAACAACTGGAAGGGTTTTGAAACCTAGTTATGAACAAGGGAAAAACGGCCGACCAAATCTCACAAACACCAATGGAAAAGTTGCCTCCACCTCAGAAGGGAAAGCCAAACCCACAGGGCGAAGGTTAATTACAGGCCCAGAAGATGATGAAGGAAGTCCATTGGTGAACCCGGATGGACTTGCTTTATTTGGACATGGGAGGGACAGCAGGCCAGTGGTCAACCCGAAGGATAAAGTGTTGACAATATTCCCTACCTGCCCTCCCGGGACATATTCAGAGGTTGATGAAAGAGGAAACCCATTGCTGGGAGAGGATGGAATACTTGACTGCTATCCTGAAGatttacaaggtttccagttTGTCCAGACGACTCTACTTCCAACAACTGAACCTCCCACAGTGGAGCCTGCAATCACCAGGCCTTTCAACAACACCCCTTCTTCGGAGTTTGACGTAGCAGGAAATCGTCGATTTACAGCTCCATATGTCAATTACATCAGTAAAGACCCTGGGGCTCCCTGCTCACTGACAGAGGCTCTGGAATACCTCCAGGTAGACATCCTTGAAAACCTCATTCAGAAGGACAGGAAGACCGTCAGTCAGGCCCCCAAGAACAAGCCGCACAACATCACTGTGGTGGCAATGGAGGGCTGCCACTCTTTCATTATCCTGGACTGGGAACAGCCGAGGAAAGATGACATGGTGTCAGGGTATATGGTACACAGTGCTTCCTACGATGATGTCTTGAACAACAGGTGGTCGTCCAGCTCAGCCAACAGCACATTTTTGCCCATGGAGAACCTGAAGCCAAACTCAAGgtaTTACTTCCGAGTCCAGGCAAAGAATATATTTGGCCTTGGTCCCATCAGTGAAACCATTACATATGTAACTGAATCAGGGGGAGAGCCTATCTGGATTCCTTTCACCTTCAAGTACAACCCATCACAGAGCACCTGCAAGGGAAGTCAATACGTGAAGCGTACCTGGTACCGGAAATTTGTTGGTGTAGTCCTTTGCAACTCGCTGCGGTACAAAATCTTCATGTCTGAAGGACTGAAAGATACCTTCTACAGCATTGGAGACACATACGGACATGGTGAGGACCACTGTCAGTTTGTAGACTCGCACATGGATGGGAGGACTGGTGCCCACAACCTCTCCAACTACCTGCCATCCGTCCAAGgataCTTCCGCGCGTTTCGCCAGGAGCCAATGAGTTTTGGGTCCATCGGCCGCCGCACCCCTCACCCCTTCGTGGGCTGGTATGAGTGTGGAGTTCCTATTCCTGGAAAGTGGTAACGGCCCATCAAACCCAGAAGAgtctacaaaagaaaaagaaaaaaagaaaaaactgttcCAATTTAATTAAGGCTATCCTGGGCAAAAGAGACACACATACTGCTTTCAAATGAAGAGttccaaatattaaaaaaacattgtatattatCACTATCATGCACTTTTTTAAAGCAGTCTGTATATATGATAAACAAAAGCATGCCTGCTGGGGTCaatttacttaattgtattttattttgctgccaTCTTCAATCCCACCATAGCTGGACTGCACACACCAAAAAATAACTACTTcatgcaatgtttgtttttcgaAGGTAACATTTGATGAAAACACATGCTTATTGTTGGCAAAGTAAAGCAAAgtattaataattttgttacAAAGTACTAACTTATTAACGAAAGAGTTCTTGTGTTGGATAACACAGGTCCACTGAGAGGACTTTGTAGTATTGTAAAATATCACCTTGACACTTTTATACCTTTAACAGAAATATAGTTGGCATACATTTTGACAATgtatgataataaaaacaaatctgagaaCGAATTATTGGGGACTGTTACtttaaatataactattttctgttcaaatatattttttaaataaattattttagtCCTATCACATCATTGGGctggaaattatttaattgtcagTATGAGGTCAGGGTCCAGGTCAGGGAACCAACAAGAGTCACATCAGCTCAGGTATggaagaaaattgaaaaaggtGCTATGGAAACCACTAAAATGAGACCAATACCCTTTTAAGATGTTCTTAAGAAGGGATTtgttgtgcttaaaaaaaaaagtacatttttagcAGACAACAGCTCTAGTAGACCTCTAGCATTGATCATATCAATAAGTACTTTCCAGTCTCTACAGAAGTGCACTAGCTTTCAGAAAAAATAGTCATGGCTTCTATGTTAGTGTTAatattaacatgttatttattCTTACTGCATTCAACAGCTTATAACAACATAATTGCCACTGGACTTTATATCTTCTATAGCTATATATCTACCGATCCATCCATCTATCACACAACCTgtggatgtttttcagtggtgACAATATATTGGTGCTGAAATTGAATCCTTGAACATGTTCCATGGTGTTGTATTTTGCACTAAAATGCATGAGCTGAAAGGCACTGCAATGAAAGCTGAGGACCTGACAATGTCCGTGCAATTCACAAACTCCAGACACATTTGTATAAAAGACTGGCAAGACTGTATATGAGATATGTAGCTTGATTAGTGTATAAattgtttgttcgttttttcatttaaatgcctGTTTTCCTCTTGGATGTATTTTAAGATGCTTTCAGAGGTAACAGAACAGCCAGAGTCCTTATACTCTTTATTCTCTCTTTAGTTCAGAAATAATGTTTGACAGgttgactttttaaaaaggtcttttcatatttctgaaaaaataaatggttttgaaaCACAAGA

Function

GO: NA

KEGG:

id description
K24484 FNDC1; fibronectin type III domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004305 True 6458 mRNA 0.45 20 42220020 42259741

Neighbor

gene id symbol gene type direction distance location
AMCG00004303 NA coding upstream 121698 42089871 ~ 42098322 (+)
AMCG00004300 NA coding upstream 136178 42069528 ~ 42083842 (+)
AMCG00004301 NA coding upstream 154609 42047643 ~ 42065411 (+)
AMCG00004298 LOC104961504,LOC106608390 coding upstream 174929 42029377 ~ 42045091 (+)
AMCG00004299 mapre3b,LOC107392001,LOC100704238 coding upstream 195280 42010685 ~ 42024740 (+)
AMCG00004309 wtap,LOC105015380,LOC100196682 coding downstream 78773 42338514 ~ 42347082 (+)
AMCG00004308 acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057 coding downstream 90490 42350231 ~ 42355400 (+)
AMCG00004314 NA coding downstream 288599 42548340 ~ 42576558 (+)
AMCG00004315 NA coding downstream 332125 42591866 ~ 42634968 (+)
AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding downstream 473075 42732816 ~ 42736569 (+)
G7231 NA non-coding upstream 130367 42087791 ~ 42089653 (+)
G7221 NA non-coding upstream 152295 42065497 ~ 42067725 (+)
G7182 NA non-coding upstream 253787 41966014 ~ 41966233 (+)
G7101 NA non-coding upstream 613261 41605110 ~ 41606759 (+)
G7102 NA non-coding upstream 690712 41523053 ~ 41529308 (+)
G7272 sod2,LOC102787761 non-coding downstream 73684 42333425 ~ 42336643 (+)
G7278 NA non-coding downstream 105127 42364868 ~ 42365654 (+)
G7288 NA non-coding downstream 116884 42376625 ~ 42379961 (+)
G7293 NA non-coding downstream 215835 42475576 ~ 42475886 (+)
G7418 NA non-coding downstream 976077 43235818 ~ 43237653 (+)
AMCG00004304 NA other upstream 3658 42210430 ~ 42216362 (+)
G7094 NA other upstream 712789 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1878785 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4372300 37832623 ~ 37847720 (+)
G6369 NA other upstream 5219862 36999357 ~ 37000158 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 429038 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2358444 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3702269 45962010 ~ 45968306 (+)
G7999 NA other downstream 5887147 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 6637376 48897117 ~ 49026355 (+)

Expression


Co-expression Network