AMCG00004343


Basic Information

Item Value
gene id AMCG00004343
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43671020 ~ 43721979 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004343
ATGCACTCTTCCGGGTTTGCGCGGGCGGCACCCAGCGGCCGCTCGACCCGTCCGACCCGAGGGGCTGCACAGCAGGGCGACTGCCCCCACAAAGACATCGACCACTGCAGGCAAAATGTTTCCAAGCCTTCATACACAGTGAAGGATCTGTACCCTCACACAGAGTACATCTTCAGAGTCTGGACCATAACGCCTCAGAAACAACTCTGTTCCCCGGCCAGCATCAGCTATTTTACAGCAGGTTATGGAGTTTCCTCTAGTGCGCCGGTGATTGACAGTGCTGAGACCCTGAGTCCCGACACTGTGGAGGTCAGCTGGTCACCTCCTCCACATCCTGGAGGTCCAATCATTGGATATCAATTAAAACTCCTAAGTGAGGAACAGTCTTTCAGGAAAGTTGCAAGCAGCCAGGacttctgctttattttttccccaacacTCCCCAATACTACATACagCGGAGAGGAATGTGACAACGCCGctGTCAGTGATGAACAATGGCTGTTTCTTTCAAGAATGGCCTCATTGAGGAGAAAGAAAGTGgcagatttatttactgaagCAGACTGTCTTCCTCCTGGACAGTTACATCACAACATAAGAATTGCTATACATTACATCTCCAAGCAAATTTACTTCTGTGAAGGAAACCACATCTGGATGAAAGGAGCACTGAATCTGTCTGACATTTCAGAtctaaaaaatgtgtatgctgGCCCTGAGGAGATTAAATCAGTATCAGTGGACTGGCTATAcaagaagatttattttgtcatggGTGGAAAGGTCTGGTATTGCAAACTAGATAACTGCAACAATACAGTGGACTTCAGTCTTACCTATCATGGATCAGTCACAAGAATTGTTGCAGATCCTTACAATGGATACATATTCTTGCTGATGGATGATGGCATTTACAGGGTGAATCTCCCAGAATTCCCAGGGCAGAACAATGACACCCACCAGGCTGTGAGAAGCAATGCAGTGCGAGATTTTGTTGTCAACTATCAGTCTAAGAGactgttgtattttaatgagacaGACAAATCTATTTCATCTGTCTTTTTAGATGGCTCATTGTTTCACAGCATGCGCCCTCCTCTGAAAGCAATACAGACACTTGTGAGTGTTACATATGAGCACAACCTCTTCATGCTCTCAGATGGAAAGTCAGTTTACCAGGAGACAAACTCTGGTGACACATTTTTCTACAATGAATACATGGTAGACTGTGATTTGGatagtattgatttatttgggtTTGACAATCTACACTTTTTTAGTGAATCCAGTCAGCCATATCCATTACCCAAAAAACCCAATCACCTGAAGGTCTTGTTTGGATCAGACATGGCTTTGCTAAAGTGGGAGACACCTTTAGCAATGATAGGAGCAAGCCCCGCTGCCTGGCAAAACTGGACGTACAGTGTCAGGATATCTGCTCTGAACCTGTCTGTAGTGCAGGAGTACAGGGATATTGTTGACACTCAGACTGCAGTTCAAGGGCTAGAAAGCTCCAGTTCGTACAGCATGGCAGTCTGGGCTGAATCTCCAGCAGGAAGAAGCCATTCTCCTAGTGTGTTTGAGGGAACAACACTGAAAAAAGTGGACAATGATCCTTACATCATTGCTGCAGGAGAAAAGGGCCTCTGGAAGCAGAAACTGGAGAGTTTTGATTCACAGTGTTTAGTATTTGCAGATCTTAAAGAAGTACAAGATATTGACTGGTACAATAGCACCATCTTCTGGAGTAACACATCTGGATACATCCATGGGATGATGATGAACCAGAACAACAGGAGCTGTGTGCTATCTGCAGTTCACAAAGCAAGTGCCTTGGCTTATGATTGGCTGGGACAGCATCTATACTGGGCTGATCTAACTTCAAGCATGataTACAGAAAATCTATGATATCTGGGGTTCGACAAGTCGTTACTCAAGGCCAATATTTGGTAAGGGATTTGGCCATTGACTCtgttaatggttttatttactgGACAACTGCATACACTGTGGAGGGTTCAAGATTAGATGGGAAGGACCATCTCACCTTCCAACAACTGCCATCTTCTGGGAAACAGGCAACTGGTTTCACAATAGACATCACTGAAGGGCATTGCTACTGGCTGGTTCAGGATGACTCAGTCTTGCACTTATACAGAGCCAGTCTTCTGAATGATGGGTTTATGGACATCGATATAATGGAATATGCATCCTGGAGTTCCTCTTGGATTTCGTATCATTCCTTGGCATACTACAGCGGGAGAATGTTCTGGCTGGACAGGGATGGCATGCTTACTGTGCAGGAATTAAACAGCAGCAGGAGTGTTGCTtactctgcagacacacagatgaCAGCTTTTGTCCTTTTTCAAAAGACACTCAAGCCTCTCCCAGATGGATTTGTTTCTCCTCCTGTTGTAATACCACAGCCAGTACCCAAGACATCTATCCAGATTACAGGAAATCATTCCATCTTTAGGGTATTTTGGGAGCCCAGCAGCAATGTTGAGTATGGGACTGTCTTCTATTGTGTGGAGTCTGGAACTCTACCAAACTGGCAAGGTCACCTAGGTCTGAAGAGTGGCTTTGCCAGCTTTTGTCTGGCACGGAATGTGTTGTCTATGCCAGTGTTTGAAGTGAGAGGTTTGCGGCCTTACAGCAGGTTTGATATAAGCATCACACCTTATACCTACTGGGGAAGAGCCAACACAACAACTGCAATCTTAAGAGCACCTGAAGGAGCGCCTTCTGCTCCATTGAGGCCCAGGATATTTGTACTGAGTGCAGGTTCACTGAGGGATTTAGAGATGGTCCAGGTGGAATTTCGGTGGGACACACCTGAAAAATCAAATGGAGTCATTGTAAAATACCTTATGTATTACTCTGTTCTCAACATAACTCACATCAGTAGCTCATCCATCATATGGGAAAAGAAGAACATATCAGCGTCTGAGACATCATACAAACTCTCTGATGTGCAGCGTGGTTCTGTGGTTCAGTTTCAGGTTCAGGCATTTACTTCACTTGTTCTCACACCAGTCCCAAGGATATTAATTTCAGCAGACAGAAATATTTCCCTCCTTGATCTCGACACCAGACAGGCTGTTCAGCTGGTTACCCTTGGAGGGAATGCAGCTCTTATTAGCTCTGGAGTTGATGGATTTCTGTATGACATTCATGATaacatgcttttcaaaactAATGTAGAGGATGGCTCAAGAGTAAAgATACTTACAGACGATCGGCTGATTAAGGCTGTGGATTTAACAATAGACTGGATTGGGAGGCGTCTATTTATTGCACCAGACATCACACTGAATTACACACAGCTGTTTGTAATTGATTTGGAgctaaaaaacacaacactggaAGTCATTAATATCCAGCAAAACCACACACGCTCTGCCCCATATGCTCTTGCTATGTATCCTCTACTCAGcCGTGTCTACTGGGTGGAGAGTTCTGCTGTGGAGAACAGGATTGCATACTTCAGTTTGAATAGTCAATCTGTGCACTATGTTTTTAGGAATCCAAACGAAACTAAAGATTTATCATTTAACAGACAATCCTGTAACTGCACTGCAGCTCAATTCAAGTTAGGTTTAGCCATGGCCTTGGATACATCACACCCAGAGAATGGCAACATTTATTTCTCCACACAAATGGGGGAAATCTGGGTTTCTGACTTGGAGGGATGTTGGTGTAAACATGTGACCAGAGTTCCTTTGCAGCCTGGTGGAATCATCAGGAGACTAGCTGTTGATACAAAGTTTGTTTACTGGACAGCCATGTCTGGCAACAATGAGACTGTGTTTCACATGGAGAAGTCAGGGGACCAGCAGGGGGCTGTGTTCACTGCGAAACAGCCAGTTCACCTGGCAGTTTATAACTCACAACTGCAGCATTACCCAGataaGAACTGTTTAATACCAGCTCCAAGCAAGGACAAACCTAGAATAATTAATGCTTCAAATAGTAGCTTTTTACTTGACCTGCCCTTGAGCAGACCCCTCCTTCAGTGCAATGGTATAACTTTGCCTACACCTACATATCTTTTGCACTACGGCATAGTGCTGGACAACAGCCGTGAAAACTGCACACATGgattgcagtgcagtgttgtgGAAGcccaagaaaatatttttcatcttCAAGGACTGCAGCCTTTTACTTCTTATGTCATCCAAACGGCTGTGAAGAATCTCTATGGGGGCTTCGAGGACCAACTCGGGGAAGCAGTCATTGGCTTAACGCTGTGTGGAACACCTGTGGCGGTGACAGATGTTTCACCTTCTGTGGTTTCTGATACAGCTGTGAACATAACATGGACTGAATCTCCCAAGCCGAACTGTGCTAGTGATAAAGTTAGGTATCAGGCCCTCATAAATATGTTGGACTTTTACCCCCCAACACCTTTGACAAAAGAGGACTTTCCAGGACACAGCCTGACCTTAACAATTAACTCTTTCAGAGAGGGATCATCCAATAGCATTGTGGTGCTGGCATTTCACCCTACGGAGAACTGGTCTTCTGCCAGCACTCCTCTCCGAGTCATTACCTTCCAGGCCCCTTTGGCCCCCAAGCTGCTCAGTGCAGGCAACACCTCTGTGGAGCTGCAGTGGAGGGCTCCCAGTGACAACAGCACACGGGCCTTCTGGGTCGAACTCAGAGAGCATGTGAAAAACAGCAATTGGTTTCAGCCCCAGACTGATTGTAAGAATGGACCCGTGACTATATGCAAGCTGTTTGGGATCCTTCCAAACAGGCAGTATTTTGCACACATCAAAGTGCTTTATAGGACTGAAGCAGAAGGTGTTTCACCATCACTGCCTTTCAGAACTACTGCTGGAGTCCCAGGGAAGCCTGGAGTTCCACAGGTCTGGCATAATGGGAAGAAAATAGTGTGGCAACAGGCTGAGGACAATGGTGGCAACATCACTTTCTACATACTGGAGAGCAGGCAGGTGCGGATGAAGAGGGTTTTAGAGAATGAGACAGGAGCCGGGCCCTGGGGGCTGGTGCACAATGACTCCTGCAGCTCAAGTGTCTGCACCTGGGAAGTTGAAAACCACATGGGGACGTTTCAGTTCCGTGCGGCAGCTGCCAATTTGCTTGGTCTTGGAGAATACAGTGATGCCAGTGAAGCTATAGAAATGCACGTGTATATCAGACGACGGAAGCGAAAGGAATCCGGTGCTAACAATATATGCATCGACTTGAAGCCTGATGCGGAACTGGATCAGATCCGGGGATTAGTGGGATTAGTTGATAACTGCTATGCTGTGAGTCCCCTGCCAGACCAGTATGAGAACAGCACTCTGCCTGTGTTTCCACGGGAGAGACTCCGACTGCAGCGCTTCCTGGGCAGTGGGGCTTTTGGCGAGGTGTATGAAGGCCTTGCTGTGAACATCCTGGGTGAAGGAGGAGGGGAAACCAAAGTGGCTGTGAAGACCCTTAAGAAAGGTGCTACAGACCATGAAAAAGCCGAATTCCTGAAGGAGGCACACTTAATGAGTCAGTTTGATCACCCTAACATCCTGAAGCTGCTTGGAGTGTGTCTGCTGAATGAGCCTCAGTACATCATCCTGGAGCTGATGCGCGGAGGAGACTTGTCCTCATATTTGAGGGGAGCCAGAGAAACTACAGGCCATCATCCATTACTGAATTCATCAGATCTACTTGACATTTGTGTGGATGTTTCTAAAGGCTGTTCCTACCTAGAGAAAAGGCACTTCGTTCACAGGGATTTGGCAGCCAGAAACTGCCTGGTGTCAGTAAAGGAGTATGACGACCCTGGTAGGGCAGTGAAGATTGGAGATTTTGGATTAGCTCGAGACATCTACAGGAGTGACTACTACAGGAAGAGGGGGGAGGCGCTGCTGCCAGTGCGCTGGATGTCCCCAGAGAGCCTGATCGATGGGATCTTCACCAAGTACTCCGACGTGGCCTTTGGGGTGCTGTTATGGGAGATTGCAACTTTAGGGGGGCAGCCATACCCAGCCTTATCCAACAGTGAAGTCCTGCACTACGTCAATTCAGGAAGGAGAATGGAGTCACCCAGACACTGCCCTGAGACTTTATACAACTTGATGCTGCAATGCTGGCACAAAGAGCCCAGCAAGAGGCCAGGCTTCCGTTACATCCAGGCCCGTCTGCAGCAGCTGAGGGAGTCTCATGTGAGCTGCCATTACAGCACTGAAAGCCCGGCTGCAGCCATTAATCACGCCTTCGAAGACACATCTGAAGATTGCACTGAAGTGGATGAAGAAGGTGCCCCTGTAGTAGGTTTATCCCAAACTTACAACACTGCAGGGCTTAACTATGTGATGGTtcagacagagaaacagcaaGATTCCTCGTGTTGTTCTACTGACATCACCtaaatgaaagaaacatttgcatgttttgaaTCAACAGAAGATAAATTGCTGAAACAGAAATACTTCATTCTTAACAACACTTTGATGGCCAAATCAAATGAAGATTCATAATCTCAGCTCTTCAGACATTTTGTTAGTTGTGTCACATGATGTTCAGAAAGTTGGTATATTGCACTGTATCATATTGCAATTAGCaggttgtattgtatttaagacACAACAGATTTTGGAACACTCCAAAATACATTGCGTACTattgctaatttaaataaacttttcaaacttttttttacaagGCAACATAATGTATATTGTAAACAGAGTGAGTGAATTATGGTATGCTTTTGTTTATATCTTCTTGAACTCTACAGCATCTATAGCTGTGTAATTTGCTTAAGAATAGTTTTGAACTGTATATGTTGGTTGATTTGTGTCACCTGTCTAGCACTGCTAGAGAGGATTATAAACAGTTATCTTgggcactgcccaagggggaggggtttagCCCGTTACCAAAGGAACCTCGTCAAAACATTTGAGGGACCAATGACATAGCTGAAATGTCTGAAAGACATTCTTTGGTGCCCTCCagtgtttaaatacataaagatgcAGCTTTAAAGatgcaaacatttatatatattaggttttatttgatatatttgcTTGGGTGCGGGTTGAAAACTATGATTTGTTCAATTGCATAGACTGGTGGTCCAGTGGAAtgtgacacagaaacacacatattAAGGATGGACTAATGGTCCTCACTTCCAAATCAGAGCACTGCAGCCAAGCACTCTACACAACCTACGTATGAAGGTTAACTAACTTATCAGATATTGTAGGGCATAACATTATACATGGAGACCGCAGCACCAATCTAGCAATTGCAACCAATAGTCTGGTTATCATACCCTGGTGATCAAGCCCACCGCTCAGCCCAGTACTCTTATTCAGGCACTCTAAAGGAAAGTCTGTTTAGTGGGGATTTGGGAGGGATGATTCCTCTGCAGTGGAGAGTGGGGGCTTTCAACAGCCTGCTATGGTTTGCATTCCTCATGATGCACTATCAGAGGAAATCAGTGACACTAAATTAGATTAATAGGATTTATGTTAaggaatgttatttttatgccatcgaaaatacttttttaaaatgattaacagctttttttaaatagttcagATACCAAATTAAATCCTTAAAATCTTTCCTTAAAAAAAGAGACAATACAACAGAGCCAGCAAAATCATCATCAagggtttctgttttaaagctACCCAGAGCTTTCTGAACTGTGTTTCTACACTTAGTTCCAAGTTAGCATTTGTAGTGCTTATGTTGACTAATGTGAAAAATGCCAGTGCTGGTGGTGTGAAAATTGCCAGCCATGTGGGACATGTGCACTGTCTGCATGTCATATAGAGCTGCTTCACAACTACTGCATTAGCATTATTAACATTCCTGCACAAATGGCTGCGTAGTGTTATGATTGAAAACCaaacatcatttattttatcaagtGATGAAGAAATTAGTTACTtgtacagattgttttttaaattaaatcaagatggtttcatttttttaaagtgacgcTAAGTATCCTcaactaaataattaattgaattgatcatttttattatgaatttgaagaatacatttctaatataGTATAAGTAGGACAATAAATCAAAAGACTCAGTGATTCATATTCCTCACAAGGGTTCTGTGTAAATAGACAAAAATGGCACTAAGCAATTATGGTCTTCCAGACTTCAGTCAAACTATATGAATATAATAGGAAGCAAAAAATGTTTAAGCCCTATCAGTTGTCAGGTTGAGATGTTTGGTAAAATGCATTGCTGTGGCTTCTTGCCCAGAGGCTGGTGATAAAAGGTCAGTGGCACTTTCTGTTTGTCTAGCCAGGAGTGTAAGGTTACAGTGTGATTTATTCAtattctaaataaaaacatactgctCTGTGCCTTTCAAACA

Function

GO: NA

KEGG:

id description
K05088 ROS1; proto-oncogene tyrosine-protein kinase ROS

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004343 True 8386 mRNA 0.44 38 43671020 43721979

Neighbor

gene id symbol gene type direction distance location
AMCG00004338 LOC106571388,LOC106607787 coding upstream 39124 43625615 ~ 43631896 (+)
AMCG00004342 gopc,LOC106607787,LOC107603060,LOC107678854 coding upstream 59925 43610781 ~ 43611095 (+)
AMCG00004335 NA coding upstream 136362 43526980 ~ 43534658 (+)
AMCG00004332 NA coding upstream 259924 43380670 ~ 43411096 (+)
AMCG00004329 LOC107549683 coding upstream 308333 43350779 ~ 43362687 (+)
AMCG00004346 NA coding downstream 73242 43795221 ~ 43798475 (+)
AMCG00004351 NA coding downstream 688620 44410599 ~ 44411051 (+)
AMCG00004354 NA coding downstream 776449 44498428 ~ 44498907 (+)
AMCG00004353 NA coding downstream 789868 44511847 ~ 44512326 (+)
AMCG00004352 NA coding downstream 827453 44549432 ~ 44552133 (+)
G7485 NA non-coding upstream 75942 43591750 ~ 43595078 (+)
G7441 NA non-coding upstream 324061 43346350 ~ 43346959 (+)
G7418 NA non-coding upstream 433367 43235818 ~ 43237653 (+)
G7293 NA non-coding upstream 1195134 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 1291059 42376625 ~ 42379961 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 356366 44078345 ~ 44088037 (+)
G7584 NA non-coding downstream 614472 44336451 ~ 44336681 (+)
G7614 NA non-coding downstream 808361 44530340 ~ 44543143 (+)
G7638 NA non-coding downstream 852352 44574331 ~ 44574997 (+)
G7644 NA non-coding downstream 865727 44587706 ~ 44587984 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 979911 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 1454658 42210430 ~ 42216362 (+)
G7094 NA other upstream 2163789 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 3329785 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 5823300 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 896206 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 2240031 45962010 ~ 45968306 (+)
G7999 NA other downstream 4424909 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 5175138 48897117 ~ 49026355 (+)
G8099 NA other downstream 5210471 48932450 ~ 48934095 (+)

Expression


Co-expression Network