AMCG00004513


Basic Information

Item Value
gene id AMCG00004513
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52197328 ~ 52212412 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004513
GAGAGAGTGAGCACGGGGCCGGGAGAGCGTCACTGGGAGACGGAGAGACCGAGGAGCGCAGTGGTTCTCACCCGTCAACTAGCCGCGTCCCTGCTGTCATTGAGAGCAACCATTAAGAAGCTTTAGAGGTGGGCACTGTTGCAGGTGGTGGCGTGTCTCTCTCGCTGCTGAAAGACTCGCCTGGGATGGCAGGCCCTCGGGGGGACGGCCCAGTCATTCGGGGAGACTCTCGCAGGTCCTGGGAGACTGAGATTCTGTAGGACGCAGCACATGATCAACTGAGATTCCTGTGGAGATCCACCATCTATAGACAATAGGATACAACATAACCTGGAGAGCGACCAAGCAGCTGCACTGAGACGAggagaaaatacacacacagtcaataTAACACTGCAGTGAATGGTAGCTGTACCCACCACCGCCCACTGAACACAAGCAGCTTGGGCACCGGTGCCATGCCGGGGCCAGGGCTGTGATGCCCCGGACAGTGTCATGTCTTCGGCGCTGTTGAGCCACGACGGTGCCGGGGGTGACGGGGTCCTgtacaaaaagaaagacagcctgGCCTCCCCCACCCTGGAGGACGCCTTCTTCCCCTTCGCCTCCCAGCGCCGAGAGTCCCTGCTGACCCCCAACCTGGCCGACCCCCCTCAGGAAGACCCCAGCTCCCTGCTCCTGGAGAGGGACCTGATCCTGGCAGCCGAGCTGGGACAGGCCCTGCTGGAGAGGAACGAGGAGCTGGGGGCCAAGCTGGAGGAGAGGGACAAGGAGATCGAGGGTTTGCAGCAGCAGTGTCACGAGCTGCGGGGGCGGCTGGAGGTCAGTAGGTTGGAGTGGGCCCAGCGGGTGGCCGAGCTGGAGGCCGACCTCGGTGCTGCCCGGGACCAGCTGGAGCGCCAGAACGGCCAGGAGAGAGACCGGAGGAGGGAGGACACCAGCCAGCTCGCCCAGCTGTCCAATCACAACCAGAAGCTGGTGGAGCAGCTGGCAGAGGTGACCAATCAACTGCCTCCGTCTCACTCTCTCCATCGCTCCTTGGGTACAGTGTGAAATGAGGGTCAAACGGACAAGCAGGGCACTGAATATTTTGGCCTTCAGAACCGAGTGCTGCAGGACAGAAAGGCCCTGATGGAGCAGAGGCTGCAGACCGCACACGAGGAGAGCGAGCGCCTGAGAGCAGAGAGCCACGGCCTGAGGGACAGGATGCTGCAGCTGCAGGAGCAGTTGCAGGAGCGAGAGAAAGAGctGGCGCAGGAGAGGAGTGAAGCGTTTGAGTTGCGGACAATCAACCACACCCTGCAGGGCCACGTCCAAGCCCTGGGAGACGAGGTCAGCCTGACCCAGCCCAGCTCCTTCCCCCTGTCCCTCAAATCCGAGATCGAGCAGAGCCAGGCACAAGACAGCAGCTTTGTTCCCGTGGAAAAGCTGAGGGAACGGGAGGAGGAACTGCAGAAACTGAAACAAGAGCTGGAGTCCAAAGACAGTGAGCTGGAGTCTCTGAGAGCAGAGGTCCGCAAGCACGATGAACAGCCCAGCCACAGttctCTGGAAGAGGAGTTGAATCACGCCAGAGAAGAGAGAGACGCCCTACACCAGCAGCTGCTCAACACCATTAAACACAAGGTGGCGCTGTCTCAGGAAGTGGAGGCCTGGCAgGAGGACATGCGCCTGGTCATCAGCCAGCAGGTGCGCACACAGGGACAGGAGGAGAAAGCTCGCGAGAAGAGGGCTTCCCTCCAGAGGAACTCTCGCTTGAGCAGATCTTTCAGGGGGCTGGGCCAGAGGGCCGAAGCAGAGGAGAGTGGGGGCTTCTTCTCTAACTTATTCAAAAAGATctgagggtgggggtgggagagaGGACAGGCATGCAAGAAGGATGGAGAACCAATGTAGTGAACAGAACAGGAAGAAACACCGAAGGGGACAATGTTTTGTCTATGGGCTTCAGGGCCTTCCCCAACGTGGAAACATCTTTGATTGCAGCGGGCGGGGAAGCAAGAGCAATAAACTCAGCACAAATAAACccaaagaagaggaaaaagttCCAGGAAACTGCATGCCAGAAAGTCTTTTAGGGCTTTTGAAACAAGCAGACATTTCCATCTCACAGTCAGCACGAACTCACTGCTTCGTGACAATAAGAAAGGGATGATTGTTTAGCCCTATACCATCATTTTGGCCTGTCAGACTTTTTGCATTCTGTCAAACAGGGAATGAAAGTCTGAACTGTGCCAGAGTATCTTTGTGCACGTACTGcatccccccaccacccttcCCCAGAAAAtcagaggaggggaaaaaatgcacaaaacagaATTACACAAGCTTCTGAAGAGCGGCAATGCATCCATATCTGTGccattaaaaataactgcatcCATATTTATTCTTATATCCTCATttactattttctttcttctgaacTCATTAATATATTCCATGGTttagaatatataaatatatgaatgcaGGCAAATGTGCAATATGTGTTGCAGTGTTGTTGCTCACATCAGGACCACAGCCATTCAGCTGCTTGGACAGGTCTAGTCGCAGCAGAACTGCAGCCCAGAAACAAAGATAGAgaagttttatattttgtacagaGCAAGCTATACTTTTCTGATGACttgcaataatatatatatatatatatatatatatatatatattaataaagaaaatgtttatgatacctgtacagtgttttaaattctgtgcCTGAAATTTCTAAAGGAAGGAGTGGAACGCCACCTGGTGGAGATGGAGAGTCACTGTTCGGCAAAACCCCTTTTCTCAGAACTGTGCAAGCGATACTCCGAATTTCGAACCATTGTcccatatttttattatatccATGGCTTGTTTTAAGATGCATTGCATCCCTTGATACAAAGATgcttatttaaatttgttatcTCACTGGAGTCAACCACGACCAGACAGCTTTTCATATACAGATCAAATAAAACTGACTCACAATCCAACCttcccatctccctctctctctctctctgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004513 True 3019 mRNA 0.53 10 52197328 52212412

Neighbor

gene id symbol gene type direction distance location
AMCG00004514 pou2f3,LOC107600771,LOC107664296,LOC107744320,LOC107712933 coding upstream 6017 52171286 ~ 52191311 (+)
AMCG00004511 NA coding upstream 38580 52157828 ~ 52158748 (+)
AMCG00004510 LOC103353371,LOC104918028 coding upstream 105118 52079670 ~ 52092210 (+)
AMCG00004508 NA coding upstream 124383 52058709 ~ 52072945 (+)
AMCG00004506 NA coding upstream 140142 52049032 ~ 52057186 (+)
AMCG00004512 ufc1,LOC107691797,LOC107574697 coding downstream 21206 52233618 ~ 52236971 (+)
AMCG00004515 NA coding downstream 31232 52243644 ~ 52243958 (+)
AMCG00004520 NA coding downstream 36258 52248670 ~ 52249026 (+)
AMCG00004516 NA coding downstream 36726 52249138 ~ 52250367 (+)
AMCG00004527 NA coding downstream 618764 52831176 ~ 52844818 (+)
G8775 NA non-coding upstream 28788 52168316 ~ 52168540 (+)
G8764 NA non-coding upstream 106037 52090885 ~ 52091291 (+)
G8658 NA non-coding upstream 533904 51645849 ~ 51663424 (+)
G8605 NA non-coding upstream 1082476 51114580 ~ 51114852 (+)
G8596 NA non-coding upstream 1226026 50970956 ~ 50971302 (+)
G8808 NA non-coding downstream 56188 52268600 ~ 52268807 (+)
G8811 NA non-coding downstream 156681 52369093 ~ 52369476 (+)
G8816 NA non-coding downstream 320317 52532729 ~ 52533018 (+)
G8817 NA non-coding downstream 341509 52553921 ~ 52554379 (+)
G8835 NA non-coding downstream 404124 52616536 ~ 52616852 (+)
AMCG00004509 NA other upstream 183698 51989353 ~ 52013630 (+)
AMCG00004501 NA other upstream 250510 51939549 ~ 51946818 (+)
G8606 NA other upstream 1082066 51114941 ~ 51115262 (+)
AMCG00004477 NA other upstream 1443896 50741388 ~ 50753432 (+)
AMCG00004463 NA other upstream 1954285 50236677 ~ 50243043 (+)
G9012 NA other downstream 970982 53183394 ~ 53183983 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other downstream 1046767 53259179 ~ 53270254 (+)
G9118 NA other downstream 1391349 53603761 ~ 53607898 (+)
AMCG00004563 NA other downstream 1423627 53636039 ~ 53670522 (+)
G9128 NA other downstream 1435599 53648011 ~ 53843859 (+)

Expression


Co-expression Network