AMCG00004514 (pou2f3,LOC107600771,LOC107664296,LOC107744320,LOC107712933)


Basic Information

Item Value
gene id AMCG00004514
gene name pou2f3,LOC107600771,LOC107664296,LOC107744320,LOC107712933
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52171286 ~ 52191311 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004514
CAGCATACTTGTCCAAGTTGACGTTAAGGTTTCCTTATCAGTGGCAGTAAACTAAACGAGGTTCCCTTTTTACTGAATAATTGCAATCTTCTGCACATTAATTACAGATAACAAGTCTACATACACACAATGGTGACGTTGCATTCTTCGCACGCAGaTATTAAGATGAGCGGTGAGGCAGTGGAGCCAGCAGAGACCCGTAACGACCAAGCAGAAGACGAACGGAATGGACTAGACTTCACAAGACAGGATTTACCCTCCCTCCACCCACTGCAGTCTCTAGTATTGGTGCCCGGGTCCCACCTGTCTTCCAGCTCTCCGTTCCTGCTCTCTCAGACTCAGACCGGCCATCAAGGCCTACTGCAGCACCAGTCTGGATTAGCACTCACTCCCCAGGGAGACGTGGGGTTGGCGATGGGGAAGCTCTATGGCAATGACTTCAGCCAGACCACCATCTCCCGCTTCGAGGCTCTGAACCTGAGCTTCAAAAACATGTGCAAACTCAAGCCCTTGCTGGAGAAATGGCTCAGCGATGCGGAAAACTCCCCATCGGATAGTATGTCCAGCGCTGCCTCCATGCCTCCCCTTATTGAGGGCTTTGGCCGAAAGCGGAAGAAGAGGACGAGCATCGAGACCAACATCAAGCTGACGCTGGAAAAACGCTTTCAAGATAACCCGAAGCCCAGCTCGGAGGAGATCACGCTGATTGCCGAGCAGCTGAGCATGGAGAAGGAGGTGGTGAGGGTCTGGTTCTGCAACCGGCGGCAAAAGGAGAAGAGGATCTGCTGCCCCCTGTCGGCGTCCGGCATGAAGCCACCCACTTACAACTCCAGACTGGTTTCCACTTCCAGGTCATTCAGTCCACTGGCCGTCTCGCAGGTTCACAGCACAATGAGTGGAGTGTCGTCCAGTTCATCTCCCAGCAGTCCCAACCGAGGCGCCTCCCCCAACAGTCTTTCGTCCAATGGCAGTGCTTTAACATCTCAGGGCGGCGGCCAGGCTCTGAACACCTCTGGGTAA

Function

symbol description
pou2f3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human POU2F3 (POU class 2 homeobox 3).

NR:

description
PREDICTED: POU domain, class 2, transcription factor 3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09364 POU2F, OTF; POU domain transcription factor, class 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004514 True 1020 mRNA 0.54 10 52171286 52191311

Neighbor

gene id symbol gene type direction distance location
AMCG00004511 NA coding upstream 12538 52157828 ~ 52158748 (+)
AMCG00004510 LOC103353371,LOC104918028 coding upstream 79076 52079670 ~ 52092210 (+)
AMCG00004508 NA coding upstream 98341 52058709 ~ 52072945 (+)
AMCG00004506 NA coding upstream 114100 52049032 ~ 52057186 (+)
AMCG00004507 NA coding upstream 127831 52028739 ~ 52043455 (+)
AMCG00004513 NA coding downstream 6017 52197328 ~ 52212412 (+)
AMCG00004512 ufc1,LOC107691797,LOC107574697 coding downstream 42307 52233618 ~ 52236971 (+)
AMCG00004515 NA coding downstream 52333 52243644 ~ 52243958 (+)
AMCG00004520 NA coding downstream 57359 52248670 ~ 52249026 (+)
AMCG00004516 NA coding downstream 57827 52249138 ~ 52250367 (+)
G8775 NA non-coding upstream 2746 52168316 ~ 52168540 (+)
G8764 NA non-coding upstream 79995 52090885 ~ 52091291 (+)
G8658 NA non-coding upstream 507862 51645849 ~ 51663424 (+)
G8605 NA non-coding upstream 1056434 51114580 ~ 51114852 (+)
G8596 NA non-coding upstream 1199984 50970956 ~ 50971302 (+)
G8808 NA non-coding downstream 77289 52268600 ~ 52268807 (+)
G8811 NA non-coding downstream 177782 52369093 ~ 52369476 (+)
G8816 NA non-coding downstream 341418 52532729 ~ 52533018 (+)
G8817 NA non-coding downstream 362610 52553921 ~ 52554379 (+)
G8835 NA non-coding downstream 425225 52616536 ~ 52616852 (+)
AMCG00004509 NA other upstream 157656 51989353 ~ 52013630 (+)
AMCG00004501 NA other upstream 224468 51939549 ~ 51946818 (+)
G8606 NA other upstream 1056024 51114941 ~ 51115262 (+)
AMCG00004477 NA other upstream 1417854 50741388 ~ 50753432 (+)
AMCG00004463 NA other upstream 1928243 50236677 ~ 50243043 (+)
G9012 NA other downstream 992083 53183394 ~ 53183983 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other downstream 1067868 53259179 ~ 53270254 (+)
G9118 NA other downstream 1412450 53603761 ~ 53607898 (+)
AMCG00004563 NA other downstream 1444728 53636039 ~ 53670522 (+)
G9128 NA other downstream 1456700 53648011 ~ 53843859 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location