AMCG00004526 (LOC103129659,LOC106941049,LOC104945933,LOC107657232)


Basic Information

Item Value
gene id AMCG00004526
gene name LOC103129659,LOC106941049,LOC104945933,LOC107657232
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52738138 ~ 52783362 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004526
ATGGACGCTCCAGAACATAAAAGAAAGGGAACGATCGCTCAGGGGTCCGACgcatctctctccccctgtgcTGGGCCGCTTGGTTCCCCGATCTGTATTCTGCTGGATCTGCAGGCACTGATTTATTCAAAGGAGTTACAGGTTCATGtgcagggaggggagagaggggaccGAACCACGCGGCACGCAGGTGCTCCTGCCAAGAACGTTCATCCCAGCTCGCTGCTCCCCACCCCCGCCTCCGTCTCTGCAGCTTGCTTGGCTGGGGAGAGGCAGTCTCAGTCGTCTGACATCTTCATTTTCGCTGGAGCCAGGCGGCGCGGGGGCGATGGCTCCCTCTCCTCCCGTGTGGCTGATGCACCTTTAAAGAGTCTCGGCCGGGCGTTTATCAAGCCGGGCGAAAGAAGCCAAACAGATCCAGGGTCGTCCCAGCCCAGCGGAGGGCTGCGGGAGCCGATTCAGAGCCCTgCCAACCTGAATGACTCCCACAACCAGATGGTGGTCCACTGGGCCGGCGAGAAGAGTGACGTCATCGTGGCCCTGGCCCGAGACAGCGCGGGAGCACCTGGGCCCAAGACTAGCTCGgTGTACCTGTCCTACGACTACGGAACGACTTTCAAGCTGATCTCGGACAGGTTCCAGCTGTCGGGAGACAAAGCCACCAACAAGCAGGTCATCGCGCAGTTCTACCACAGCCCCGCGGACAACAAGAGGTACCTCTTTGCGGACACCACCAACAACTATCTCTGGAACACCTTTGACTTCTGCACCACCATCCAGGGCTTCCCTTTGCTCTTCAAGCCCACAGACCTGCTCCTGCACAGCAAGAAGCCCAACTTGGTTCTGGCCTATGACAGCTCCCACCCCAACAAACCGCTGTGGAAATCCGATGATTTTGGGGAGACATGGATTTTGATTCAGGAACACGTCAAGTCCTACTTTTGGGGCATTGACCCGTACGACCCCCCCACCACGGTGTTCGTGCAGCGCCACGAGCCCCTGGGCTCCTCCAGCGTGCTCAGCAGCACCGACTTCTTCCAGAGTGAGCAGAACCGCCAGCTCATCCTGGACCGGGTGGACAACTTCCAACTCCGGGAGAAGTACATGTTCGCCACCAGAACCGTGAGCCTGCTGGGAAGCCACGAACCGGCCTCCGTGCAGCTGTGGGTGTCCTACAACCGCAAGCCCATGAGGGCCGCCCAGTTCATGACACGCCACCCCATCACGGAGTATTACATTGCGGACGCCTCCGAGGACCAAGTGTTTGTGTGCgtcaaccacaacaacaacgtCACCAACCTGTACATCTCGGACATGGAGGGTCTGGGCTTTTCTCTATCCCTGGAGAACCTGCTGTACTACAGCCCTGAGGGCACGGGCAGCAACACGCTCATCAGgtaCTTTGCCAATGAGCCATTTGCAGACATCCATCGTGTGGAGGGGCTCCGGGGGGTCTTCATCGCCACACTGATCAACGGCTCCCTCAGCGAGGAGAACATGCGCTCGGTCATCACCTTTGACAAGGGCGGCACCTGGGAGCTGCTGCAGCCGCCCACCGCCGATAGCCTGGGGGGGACGGTGGCCTGCGAGCTGTCCAAGGGCTGCTCCCTGCATCTGGCCCAGCGCTGGAGCCAGCTGCTTAACATACAGCTGCGTAGGATGCCCATCTTGTCCAAGGAGTCGGCCCCCGGACTCATCATGGCCACGGGATCTGTGGGCCGAAACCTGGCCAACAAGCCCAACGTGTACGTGTCCAGCAGCGCGGGGGCGAGGTGGAGAGAGGCTCTGGCAGGCCCGCACTATTACAGCTGGGGAGACCACGGGGGCATCCTGATGGCCATCGCGCAGGGGGGGCCCACCACGCAGCTCAAGTTCAGTACCAACGAGGGCGAGACGTGGAAGGAGTTTGAGTTCTCGGACCGCGATGTGTTCGTCTACGGCCTGCTGACCGAGCCGGGCGAGAAGAGCACCGTTTTTACCATCTTCGGCTCCTACGCCGACCAGTCGCACAGCTGGCTCATACTGCAGGTCAACGCCACGGACGTGCTGGGGGTCCCGTGCGCCGAGAGCGACTACAAGCCCTGGTCTCCGTCGGACGAGCGCGGGAACGAGTGTCTGCTGGGCCGCAAGGCGGTGTTCAAACGCCGCACGGCCCACGCCACCTGCTTCAACGGGGAGGACTTCGACCGGCCCGTCACCGTCAGCAACTGCTCCTGCACACGCCAGGACTATGAGTGGTACAGACGAGTGCCGGGGGACACCTGCAGCGGGGGGGATGTGGAGGCCAGGCTGGACGGGGAGATGCTGCCTTGTCCGGTGGGAGAAAGCAACGAGTTCCTGCTCTACGCCCTGCGCAGCTCCATCCATCGCTACGACCTGTCCACCGGCACCGACCAGACCCTGCCTCTGTTCGGGCTGCGGGAGGCCGTGGCCCTCGACTTCGACTACGAGCAGAACTGTCTGTACTGGGCCGACATCGCCCTCGACGTCATCCAGCGACTGTGTCTGAACGGCAGCTCGGGGCAGGAGGTCATCGTGAGGAAGGGGCTGCAGAATGTGGAGGCTTTGGCCTTTGACCCCGTCAGCCGACTGCTCTACTGGGTGGACGCCTGGGCACAAAAGATAGAGGTATCCAACCCTGACGGAGACTTGCGGCGCACTCTGCTCAACTCCTCGGTGCTGGAGCACCCCCGCGCTCTGGTGCTGGTCCCCGGAGACAGTCTGATGTTCTGGACGGACTGGGGCGACCGGGCAGCCGGGCTGTACCGCGGCTGGATGGACGGCTCCAACGCGTCCTGCATCGTGTCGGAGGGCGTGCGCTGGCCCAACGGCATTGCTGTGGACGACGCATGGATCTACTGGACCGAGGCGTTCGGGGACCGCATCGAGAGGGCGGACTTCACAGGGGGGCAGCGCACCAACGAGATCTACTGGGACGACTGGTCCCGGATGGGCATCTTCAAAGCCCCGAAGTCCGGCTCGGCAGACAGCGAGTTACTGGTGGGGCGCCTGACTGGTGTGATGGACCTCAAGATCTTCTACAGGGGCAAGAGCAGAGGCCAGAACGCCTGTGCCAACCATCCCTGCAGTCTGATGTGTCTCCCCAGACCAGGGCACCACCACACCTGTGTCTGCCCCGAGGGGGTGCCCACCACCACCCTGCCCTCGGGAGAGCTGGGCTGCCAGTGCCCCCCCGAGTACCAGCTGATTAACAGCACCTGCATCAAGAACGAACGAACCTGTCTGCCCAACCAGTACCGCTGCCACAACGGCCGCTGCATCAGCAGCATCTGGCAATGCGACAGCGACAACGACTGCGGGGACATGAGTGATGAGGAGGAGTGTCAGAGCCACCAGTGCCGCGAGGACGAGTTCACGTGTGCACGGGGCGTGTGCATCCGCGCTGCCTGGCGCTGCGACGGCGACAACGACTGCCGCGACTGGTCCGACGAGGCCAACTGCACTGTGGGTCACCATACCTGCGAGGCGGGCAGTTTCCAGTGCCACACGGGTCACTGTATCCCTCAGCGCTGGGTGTGCGATGGTGACGATGACTGCCAGGACGGCTCTGACGAGGAGCCCCAGCACTGCGGTGGCTCTCACTGCAATGGCTTCCTGTGCCCGAACAACAACACCTGCCTGCCGGCCAACAGACACTGCAACGGCGTGGAGGACTGCCCGGGGGGGGCGGATGAGAAGCACTgcgACCCCCTGTGCACGCGCTACATGGACTTCGTGTGCCAGAGCCGGCGGCAGTGCCTGTTCCAGTCCATGGTGTGCGATGGCATCCGGCATTGCGAGGACGGCTCTGACGAGGACCCCACTTACGCCGGCTGCTCTGCCCGTCCAGAATTTGAGAAGACCTGTGACTCGTACAGCTTCCAGTGCGTCAACGGCATGTGCGTGAGCCTGGAGTGGAAGTGCGACGGCATGGACGACTGCGGGGATTACTCCGACGAGGCCAACTGCGGCTCTCCCACCGAGGTGCCGGGCTGCTCACGGTATTTCCAGTTCGAGTGCCGCAACAAGCGCTGCGTACCGACCTGGTGGAAGTGCGATGGTGAGAACGACTGCGGCGACTGGTCCGACGAGGCTGACTGCGGCGAGCCCGGAGTCCATCCCCACTCCACCACCCCCAGCAGCCCCCTGACCTGCCCCCCCAACCGCTTCCGCTGCGGCTCGGGCGCCTGCATCATCAACAGCTGGGTGTGCGACGGATACGCCGACTGTGGGAACAGCACCACGGCCCCCGCGCCGGCCTCCACCGCGGCCCCCGGCAGCTGTGGCAAGGTGGATTTCCGCTGCCAGCACCCCCCCTCCTGCATCCCCTACTGGCAGCGCTGCGACGGGCGCAAGAACTGCCAGGACGGCTCCGACGAGAGCGACTGCCCGACTCACGGGCCCCTTTCCTGTGTGAACGGGACGTCGTGTAAAGACAGTGATGCCTGCTTGGCCCCGGGGGAGGTCTGCGATGGCTTTATCGACTGCTCGGACATGAGCGATGAGCACAACTGTTCTGTGGACTCCCTGGTCTATAAAGTCCAGAACCTGCAGTGGACCGCGGACTTCTCCGGCGCCGTGACTCTGACCTGGTCCCGGCCCAAGAACCTGCCCCAGTCCTCCTGTAACTATGTGCTCTATTACCGACAGGTGGGGTCCACCTGGACCTCAGTGGAGTCTCACAGCAACAAGTCCAGCTACAGCCTGACCCTGCTGCGGCCCGACACCACCTACCAGGTCAAAGTCCAGGTGCAGTGCCTCAGCAAGCTGCACAAAACCAACGAGGTCATCACCCTGCGCACCCCCGAGGGCTTGCCCGACGCCCCCCGCAACCTGCAGCTGTCCAGCGCCGACAGAGAGGATGGCACGGTGGTCTGCTCCTGGCTGCCCCCCGCCAACTCCAATGGGCTGATCCGGGAGTACATTgtGGAGTACAGCGAGAACGGCAGTGCCGAGTGGTCCTCCCAGCGCAGCCCCAGCTCCACTAACGAGATGAGAAACCTGCGGCCAGACGCCCTCTACAACGTCAGGGTGGCTGCGGTGACCAGCCGTGGCGTAGGGAAGTGGAGTGACGTCAAGTCCATCACCCCCAAGAAAGGCAAAGCTCTGCCTGCCCCCACGGTGCGAACAGACAGCGTCACCGAGAGCTCCGTCCGACTGAGTCTCAGCCTCGACTCCCACTACCAGGTGAAGCAGTATGTGATCGACCTGTCCTGGGTCTTTGATGCTCACGTGAAGGAGAACCGCACCCTGACTGTGGACAGCAAGAAGACCACACTGAAAGTGGGCAACCTGACGGCGGGCACGGTGTACGAGGTGGCCGTGTGGGCCCAGACCGAGGTGGGTGACTCGCCGACTGCGCTGTCCCGCCTGACCACCCACGGAGAAGCGCCCCAGCCGCCCCTGCTGAAAGCCCGCGCTCTCAACCAGAGCAGCGTGGACTGCAGCTGGACAGCGCCCCCCGTTCAGgagtACGGCGTGTTCTTCGCCACCTCGTTCCTGGAGCTGTACAGGAACCCGCGCAAGGTCAGCACCTCGGGGACCAGCCTGACCATCACGGTGGACAGCGATGAGCAGTATCTCTTCCTGGTGCGTGCGACCTCCCCCTACCTGGGACCCCCCTCGGAGTACGCGGTGGTCAAGATGATCCCCAACAACAGGCTGCCCCCGCGCAACCTGCACAAGGTGCGGGTGGACAAGACCCAGGCCACGCTGAAGTGGCAGCCCCCCTACGACTACCCCAACACGCCGCTGACCTACGCCATCCACCTGAGGGACGCGCTGAGGAAGTCGGAGAAGAGCTACAAGCTGACGACGCGCAACAACACGGTGGAGTACACGCTGAAGGCTCTGGAGCCCGGCGGCCGGTACAGCGTCTCGGTGCGCCTCGTCAACATGAGCAAGGAGGCCAGCTACACCCTCAACACAGTTCCCCTGCCCGCCCCCGACGCCCTGAAGATCCTGTCGGAGAACGATCACGTCTTCCTCTTCTGGAAGAGCCTGGCGGTGAAGGAGAGGAGCTTCAATGAAAGCAGGGGCTATGAGGTGCACATGTACGACAGTGAGACCAACACCACCACCTGCCTGGGCAACACCACCGAGACCTTCTTCCGCATCAGCAGCCTGCTGGCCGGGCACAACTACACCTTCTCGGTGCAGGCGCGGTGCTTGGTGAGTGGACAGCTGTGCGGGGAGCCGGCGCTGCTGCTCTACGATGACCTGGCCGTGGATAACCCCAGCCCCTCGACGGCGCGGACGGGCCGCACGGGGGACGTGGCGGCCGTGGTGGTGCCCGTGCTGTTCCTGCTACTGTTGGGTCTGGCCGGGGGCTTCGCCGGGCTGTACCTGCGCCACCGCCGCCTGCAGGCCAGCTTCACCGCTTTCGCCAACAGCCACTACAGCTCCCGTCTGGgcgaTGATGACGAAGACGCCCCGATGATCAGCGGCTTTTCCGACGACGTCCCCATGGTGATAGCGTAGACGAGTCCTGCGCCCGCCTCTacctctctctatctatctctctctctctctctctctctctctctccccttccgtctctctctgtctctgcttgTCCTCCTCCCTTCCTCGTGTTTGTGACCGTGTGCCGAGGGGGAACAGCCGGAATgtgggagggggtgggaggg

Function

NR:

description
PREDICTED: sortilin-related receptor-like isoform X1

GO: NA

KEGG:

id description
K24498 SORL1; sortilin-related receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004526 True 6647 mRNA 0.63 47 52738138 52783362

Neighbor

gene id symbol gene type direction distance location
AMCG00004525 NA coding downstream 4333 52726785 ~ 52733805 (-)
AMCG00004524 NA coding downstream 72911 52623406 ~ 52665227 (-)
AMCG00004523 grik4,LOC108439963,LOC107676315,LOC106529682 coding downstream 338967 52353372 ~ 52399171 (-)
AMCG00004522 NA coding downstream 401532 52317631 ~ 52336606 (-)
AMCG00004521 grik4,LOC108439963,LOC108277597 coding downstream 441894 52254843 ~ 52296244 (-)
AMCG00004528 NA coding upstream 26233 52809595 ~ 52821661 (-)
AMCG00004534 NA coding upstream 143999 52927361 ~ 52931681 (-)
AMCG00004532 NA coding upstream 180851 52964213 ~ 52967709 (-)
AMCG00004540 NA coding upstream 213750 52997112 ~ 52999812 (-)
AMCG00004539 NA coding upstream 223037 53006399 ~ 53008624 (-)
G8833 NA non-coding downstream 183765 52553919 ~ 52554373 (-)
G8829 NA non-coding downstream 368675 52369239 ~ 52369463 (-)
G8795 NA non-coding downstream 534458 52203194 ~ 52203680 (-)
G8776 NA non-coding downstream 569597 52168340 ~ 52168541 (-)
G8769 NA non-coding downstream 575056 52116880 ~ 52163082 (-)
G8981 NA non-coding upstream 318539 53101901 ~ 53104836 (-)
G9002 NA non-coding upstream 364403 53147765 ~ 53147974 (-)
G9048 NA non-coding upstream 497689 53281051 ~ 53284971 (-)
G9074 NA non-coding upstream 710133 53493495 ~ 53493710 (-)
G9141 NA non-coding upstream 879022 53662384 ~ 53663246 (-)
G8761 NA other downstream 666552 52068053 ~ 52071586 (-)
G8760 NA other downstream 672256 52065526 ~ 52065882 (-)
AMCG00004505 NA other downstream 783606 51942693 ~ 51954532 (-)
AMCG00004481 NA other downstream 1999622 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 2012785 50723867 ~ 50725353 (-)
AMCG00004529 bco2 other upstream 67121 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 115397 52898759 ~ 52911752 (-)
G8937 NA other upstream 163450 52946812 ~ 52951387 (-)
AMCG00004551 NA other upstream 395660 53179022 ~ 53189393 (-)
AMCG00004567 NA other upstream 903054 53686416 ~ 53863369 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04353484_04415940 SORL1 coding CI01000072 null 4352864 ~ 4415940 (+)