AMCG00004595


Basic Information

Item Value
gene id AMCG00004595
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54470018 ~ 54482791 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004595
GCGGCTTATGTAATATGTTATGacatgaaagagagagaggggcagagacgGAGACACAGGTGACGTGCATTTCCTGAAACACCTGTGTGTCAGGTGTGCAGTAACAACATGGAGGCCCGCACGGCGCCGCTGCGCCCCTGACTCGGCGCCTCAGTGCTGCTGTGTCCGGCTCTTCGTCCGGCTCTTCGTCCGGCTCCGCGGATGTGGCGGCCAGGCCGGGTGGGCTCGCTGTCCCGCTGTGTTTTCCTCGTTGTCGCAGTGAGTCTGGGGGCTGCCATGTACGTCCGGGCCCCCGCAGAGCTGGCAGGCTTCCAGGGCGAGGACATCACCCTCAAGTGCACTTTCCGCTCCGATTACAGCGACACACACCGGCTGTCAGCCAACTGGGCCTTCCGCCCCAAGACTGGGGGTCCGTTGGAGAGTGTCTTCCACTATCAGTCGGCGCCGTACCCTGCCACCGAGGGCCGCTTCAAGGACCGGGTGTCCTGGGCGGGGGACATCTCGTGGCGCGATGTCTCCATCCTCATCCGGAACCTCTCGCTCAGCGACAACGGCACCTTCACCTGCGCCGTCAAGAACCCCCCCGACGTCCACGGCCCCCTGGCCCAGACTGAGCTCTCTGTCACTCGCAGACCGCCCTCACTTCGCTTCACGGGCTTCGCGGTACTGGTGCTGCTGGTGCTCCTGCCCTCCGCCCTGATCCTGCTGGTCCTGCTAGGGAGAGTAGAGGAGATCCCCCACCAGAGGGCCACTGCGAAGCACAAATCATGTGCCGTGTGCTGTGCCACATGTTTGGAGGACTTGGACCATGAGGAGTACTACATCCCAGTCCAGCAACAGCTGGAGGAGCCTGTTGCCGAGTCTCATTGCTAGCTCCCCCTGCCGGTGACTGTGGGTGTTATAGGACTGACTCCTCTCCACCCCCCTGCCGTCTCGCACTGTACTGGGGCTCTCGGGAGATGGGGACTGCTCCCgactctccctccatccctcacAGAGAAATCCCTCTCAAGTCTCCAGACTGTATAAGACTCTGGCTGCCAGAGCACCGAGAATCATTGCcagacagagctgtgtgtgtcagacctGAGTATACCGTACTGACCGACCGACAGTGGTCAGTTACTGGTGGCACCATAACACAGCAGTAAGACCTTTGCACAACAGTCTTCACTGGTTCAATTGGTCAGATCAGTCtgtttcaaacacacacacgcgcacacacacacacctgtgtaATGAAGGATTGCTTTAAGATGTCAGTTCTTGTCTCCTGGGCATTTTCCAAGGTGGTTATTTCCTCTAAACATTGAattatcactttattttattgtgaagcCAGGCTATGGCTTATTGTACAATTGCTATAttgaaaggtttatttttgattatgtgttattattttgatgtgCATCACTTCTCTCCCCCTGACTCTGATTGGCACTCGTCTGGGAGTTAACCTAAGTAAGAAACcacttgtttcctttttaatttatttaaacttctACCTAATGTCTTCCGTTCTTGTTCAGTGCAATCCTGTCATTCTGAAAGGGCTTTAACGTCTCTCAAAACAAGCTACTCGTATCCACTAAATCAGTTCTGGAAACAGAAAGTGGTATAGCACACACATCTTGCAAGACGTTTGACACTTGTGTGGCTTGACGCAAAAGCGACGAAACGCAAGCTTTGGTTATTGTGACAGTATCTGCAATTGTGCACTTTAACGCTCTGGCTGTGAGAAACACGGGCCAAAGGAAGGCTTTCTACATGCATTAAACCCTAAACTGGAATCTGTACCTGTTCATAAGAGCACTCCCAGGAGTAGCTATTAGTTTTAAACCTGCAGCCAAAGTGAAATGCTTCCTCAGACGCTTCTCGTAGCAGCTGTGTGTGCTTTGTGGCGTTCAGGTCGGTGTCCCATTAATTCCCCTTTCTTTGTCCCCATtggggtgtgtgtttgtgaattatTGTGTATGTGggcctgtgcgtgtgtgtgtgtgtgatgtgcaGAACCTGGCATTGTGTGTCCTGCAGGACTAAAGGAGATGATTATTTAATAAacttatatttctatattttaagtGTTCTGTGGAAATGGTTTCGACAGATTCACTTGTATACGGAAGGGctctttgtatgtgtgtatgtatgtatgtgaggaACCAGTGAGGTACCAGTGAGGAAAAAAGTTGGCAATGCCTggcagaagagaaaaaaaattaaaaaataaaccgtAGCGCTTGAATTAACAAGTGACAGTGTTACAAGACGTTATTGTTCTGCTCCATGCCTGCCAGACCAGATAGTGTTAGTTTCCATATTAACTCAGTCTTGATAATAGTCTAAAGTGTGTGACCTGTTGCCCTGATGTTTGGTACTGTGCCTGTGGATGCGTCActccaaaaatacataaatgagtACATAAAGCATCTTTCAAACCCCAGAAAccgaaaaaaaaaggttaagaaAGGTCAATGTGACTGAGCATATTTAGGCAATATTGTTAATGATCATCTAAACCAGTGGTTCTCTAAGTGTGGCCCCCAGACCCCCAGTGGGCCACGCCCGGCCCTGCTGGTGCTCCGCAGGATGATGCAAACGCAGGTTTATACGGAAATAATGACcgtgtttatacatttttgtttcagacTGGAATTAATATTTTCCTGATCATGTCATGTAAAAATGAATGGAG
>TU11600
ATTGCTCAAAGTTTTAAACACAACCTCCACAAACCTTCATCTTTGACACTGATTAAAATACCGAAAGTAACATGTTCTGGGGTGCGGCTTATGTAATATGTTATGacatgaaagagagagaggggcagagacgGAGACACAGGTGACGTGCATTTCCTGAAACACCTGTGTGTCAGGTGTGCAGTAACAACATGGAGGCCCGCACGGCGCCGCTGCGCCCCTGACTCGGCGCCTCAGTGCTGCTGTGTCCGGCTCTTCGTCCGGCTCTTCGTCCGGCTCCGCGGATGTGGCGGCCAGGCCGGGTGGGCTCGCTGTCCCGCTGTGTTTTCCTCGTTGTCGTGAGTCTGGGGGCTGCCATGTACGTCCGGGCCCCCGCAGAGCTGGCAGGCTTCCAGGGCGAGGACATCACCCTCAAGTGCACTTTCCGCTCCGATTACAGCGACACACACCGGCTGTCAGCCAACTGGGCCTTCCGCCCCAAGACTGGGGGTCCGTTGGAGAGTGTGAGTCACTGCGCTGCTCTCGCTCAACAGGGAGAGATGGAAGTTTTAGTATTGTCCTGAGCACTCCACCAGATTCCCGTCAGTCTTTCTCCATGCAGCATCCAAACTCTGCAGCAGGGCCTGTGGAGAAGATCCACACAATGACATCATGGCCGGAGGGTGACATTCGATGCGTGTGCTCAGGCTTCATCTTGCTTCCCTCTATCTGCCTCTTCTGGTTTTTCTGGTAGTGACAGCTTTGTGGCAGCTTTTTCTGGTAGTGAGAGAGCTGTGCTGGGGAGGGCCAGCAGAGCGCAGCAGTGTGCTGAACAAGCCAACATTTCATAGCTAAACTgagctctccctccctccctccctccctcccgtGATGGTGCTGGAATTCCCCTAAAACAACGTCTTTAGTCACAATTCTGTAAAACCAGTCGTGGGCGAAAATGTAATGAGCTGTCAGGCGCCATCGAAGTTGGATGTTTTATGATTGACCATTTATAAATGATAAGTCAGAATAGACTCTCTTCTGAGTCGGCACTGACCGGCAGACAAGATCTGTGCCCCCCCACACATTGAGACCCATCATTGAGTATTGCTCTGCAAAACATGGGAGCTGGAGTCTCTGATTTAATGAGTGTCATCCCAGCAGGACCACTTCAACCACTTAGGGACCGCTGGGCGAAGGAGATACTGATTGTCCCCACACGAGTTATACTTCTTGCAATATTTGATTAGAAACCTCATtagtaatttagttttaataatgCTCTGAAAGTAAGTTTGTGAAATGCCCAAGTCTTTGTATTGTAGCCTCTGCCTTGTCCATTTTAAGTCTTTTaactttgtatttatgtatttgttacaaATTATTAACACTGATCAGCTGCAACCTACTTCAATGCTGTTATCTAAACGAGTAATACAGACGACCTATTGATGAATTAGACTGTTTAAAAGAATAGAAAGCAATGGCAGCCACACTACAGGTAAGACAGAGAAACTGGACACATCCTTAAACTGGGGTTCAGTTTCTATGCACAAGCACACCAGACCCACAAACAGATGTATTGTGTTAAATGGCATTGAATCTTTAATCCAGagaaagtttgtaggctgtgTTGTGGGCGTGGCCTAAATAGAGACCGCCATCCTTGGCTTCTGTCCCAAATTAACACTTCTGAGCAGCATCCCATTGAAGGCCCTGACAGTAATTGTATTGCAGTGTTTGCGGAGCTGGGATTTATAGTGACCTGTTATCAGCAATTTGTGGTTGTAGATAACGGAGCCATAAAGCTATAATCCTGGATTGCACAGCAGGGACTGAATATCTGATAGATCTACCACAGAGGAAAGCAAGACTTAAGAGTTCCTAAGGAGGGACTATAGTTTTTATCCCTGGTTCCATTTACAGCTGATCAATACTCTTAATATGTGTCCCTTATAAAGACAATGCCTTATTTTTCCACACAGGGTTTGCTGTTGAGTTTAGCACAAAATGTGAGGCTTTAGCAAATGGATTAAACgtataataatgtgttttgagAGTATTGCTGCTGTGTGTGAATACCCTTAATGTGGGTTAATTACACCTCCCCATTCAGTCACGAAGTGTACAGATGAAGCTTTTCATGTGATGCTCTGTTATGAATATCATTCAACTATAAATATGATAATATCATTGCACACTACATCCCAATGTGTCCGCTACTTCAGTGATCGCTACTCTCGGGATCTGTCCAGTATGTGTTGTGAATAGGAAATGCAAAAagcaggggcagactgggaccaAAATACATGTTCGTTGAATATAGTCAAGTGCAGTATCCATACTCACACATACGGTTATATATGGAATAAGATCGCTGTTAAAACATTGGTCCTCCCCAAGAGGTTTCCACTTGTTCAGATGgacagcatctcttttccaggtcacaccaccTTATTCATCTTCCCTTCTTTTACGTGGTCCTCTTTTCATTCTCTATAGGAGAGCCCTTAGTGACGTATGTTcagtatttgcatatttgtccCAGACTGCACCACTGCCaacattaaataagttaatttgcAAAACGAAATATGTTAAAAGATCGACTTTAGGCAAATGGAGTCTACACAAAAACACCCCAATGGTGTGTCTTAAACAGCGGGAGGAAACCAGCATTTCCTCGTTACTCTGAGAGTGAAACCATGAGTCTAAACGTTGACGCCGCGGACCCGGGCCCTGGTCCTGTGTGTCAGCACTCACCAGCTCTGGCTTCTCTTCAGCGCGCACAAGCCTTTCGCCTTTTACTAAAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004595 False 2698 mRNA 0.50 6 54470101 54482791
TU11600 True 2794 lncRNA 0.46 2 54470018 54474840

Neighbor

gene id symbol gene type direction distance location
AMCG00004596 NA coding upstream 2279 54457064 ~ 54467739 (+)
AMCG00004593 NA coding upstream 35315 54426991 ~ 54434703 (+)
AMCG00004594 NA coding upstream 48564 54416682 ~ 54421454 (+)
AMCG00004600 NA coding upstream 68139 54400965 ~ 54401879 (+)
AMCG00004597 NA coding upstream 75975 54385591 ~ 54394043 (+)
AMCG00004603 NA coding downstream 12966 54495757 ~ 54513639 (+)
AMCG00004602 NA coding downstream 32239 54515030 ~ 54520658 (+)
AMCG00004601 NA coding downstream 81304 54564095 ~ 54571744 (+)
AMCG00004611 dscaml1,LOC106534979,LOC107699210,LOC107728164,LOC107752281 coding downstream 335811 54818602 ~ 54827192 (+)
AMCG00004617 NA coding downstream 401270 54884061 ~ 54894951 (+)
G9298 NA non-coding upstream 25501 54384226 ~ 54444517 (+)
G9250 NA non-coding upstream 257363 54212447 ~ 54212655 (+)
G9249 NA non-coding upstream 258595 54210909 ~ 54211423 (+)
G9248 NA non-coding upstream 259312 54210341 ~ 54210706 (+)
G9247 NA non-coding upstream 260100 54209716 ~ 54209918 (+)
G9399 NA non-coding downstream 126109 54608900 ~ 54611343 (+)
G9423 NA non-coding downstream 185437 54668228 ~ 54674910 (+)
G9435 NA non-coding downstream 217025 54699816 ~ 54704226 (+)
G9464 NA non-coding downstream 319186 54801977 ~ 54802435 (+)
G9521 NA non-coding downstream 577299 55060090 ~ 55060304 (+)
G9300 sidt2 other upstream 74718 54394791 ~ 54395300 (+)
AMCG00004588 NA other upstream 115042 54346502 ~ 54354976 (+)
AMCG00004585 nfrkb,LOC107567165,LOC107715331,LOC107693532 other upstream 142419 54314122 ~ 54327599 (+)
G9197 NA other upstream 436711 54032031 ~ 54033307 (+)
G9129 NA other upstream 608490 53677564 ~ 53861528 (+)
AMCG00004604 NA other downstream 117827 54600618 ~ 54629219 (+)
AMCG00004606 NA other downstream 241965 54724756 ~ 54743005 (+)
AMCG00004608 LOC103361032,LOC104918006,LOC103372158 other downstream 261923 54744714 ~ 54765829 (+)
AMCG00004609 NA other downstream 285819 54768610 ~ 54778903 (+)
AMCG00004610 NA other downstream 300955 54783746 ~ 54789762 (+)

Expression


Co-expression Network