AMCG00004611 (dscaml1,LOC106534979,LOC107699210,LOC107728164,LOC107752281)


Basic Information

Item Value
gene id AMCG00004611
gene name dscaml1,LOC106534979,LOC107699210,LOC107728164,LOC107752281
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54818602 ~ 54827192 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004611
ATGAATGGAGTCATTGATGGGTCTGGGATCCTGAGGGCCCAGCCTGGCCTGTCAAAGGGGCCACAGAGTCTGATGTTTTCTGCGCACAGTGAGGATGGTGGGACCCGGCTGTACTTTCTGAATGCCTCCCTCCAGCAGGTGACCTTCTCCAGCTCGGTGGGGGTGTCTCTCCCCTGCCCGGCGGGGGGGTCCCCGGGCGCGGCGCTGCGCTGGTACCTGGCCACAGGCGACGACATCTACGACGTGCCGCACATCCGCCACGTGCACGCCAACGGCACCCTGCAGCTCTACCCCTTCTCGCCCTCCGCCTTCAACAGCTTCATCCACGACAACGACTACTTCTGCACCGCGGAGAACAGCGCCGGCAAGATCCGCAGCCCCAGCATCCACGTCAAAGCAGtgTTTCGGGAGCCCTACACAGTGCGGGTGGCAGACCAGCGGTCCATGCGTGGCAACGTTGCTGTGTTCAAGTGCCTCATTCCCTCCGCGGTGCAGGAATACGTCAGCGTCGTGTCCTGGGAGAAAGACACCGTCTCCATCGTCCCAGGTAGGGCCCTGGCGTCCTCTCTGTCTCCTGCTGGGGTGCTGGGCTCGGGCCCCGCTGCTGGGCCACGCTTGGGGGGGTGCATGGTGTAA

Function

symbol description
dscaml1 Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion and central nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in brain; ciliary marginal zone; retinal ganglion cell layer; and retinal inner nuclear layer. Used to study ocular motility disease and ocular motor apraxia, Cogan type.

NR:

description
PREDICTED: Down syndrome cell adhesion molecule-like protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004611 True 636 mRNA 0.64 3 54818602 54827192

Neighbor

gene id symbol gene type direction distance location
AMCG00004601 NA coding upstream 246858 54564095 ~ 54571744 (+)
AMCG00004602 NA coding upstream 297944 54515030 ~ 54520658 (+)
AMCG00004603 NA coding upstream 304963 54495757 ~ 54513639 (+)
AMCG00004596 NA coding upstream 350863 54457064 ~ 54467739 (+)
AMCG00004593 NA coding upstream 383899 54426991 ~ 54434703 (+)
AMCG00004617 NA coding downstream 56869 54884061 ~ 54894951 (+)
AMCG00004613 NA coding downstream 68673 54895865 ~ 54913735 (+)
AMCG00004615 dscaml1,LOC105417068,LOC101484774,LOC102301208 coding downstream 91170 54918362 ~ 54927251 (+)
AMCG00004612 NA coding downstream 124475 54951667 ~ 54953121 (+)
AMCG00004616 NA coding downstream 131128 54958320 ~ 54958958 (+)
G9464 NA non-coding upstream 16167 54801977 ~ 54802435 (+)
G9435 NA non-coding upstream 114376 54699816 ~ 54704226 (+)
G9423 NA non-coding upstream 143692 54668228 ~ 54674910 (+)
G9399 NA non-coding upstream 207259 54608900 ~ 54611343 (+)
G9298 NA non-coding upstream 374085 54384226 ~ 54444517 (+)
G9521 NA non-coding downstream 232898 55060090 ~ 55060304 (+)
G9524 NA non-coding downstream 263189 55090381 ~ 55090641 (+)
G9525 NA non-coding downstream 287159 55114351 ~ 55114914 (+)
G9526 NA non-coding downstream 287812 55115004 ~ 55116494 (+)
G9527 NA non-coding downstream 291801 55118993 ~ 55123517 (+)
AMCG00004610 NA other upstream 28840 54783746 ~ 54789762 (+)
AMCG00004609 NA other upstream 39699 54768610 ~ 54778903 (+)
AMCG00004608 LOC103361032,LOC104918006,LOC103372158 other upstream 52773 54744714 ~ 54765829 (+)
AMCG00004606 NA other upstream 75597 54724756 ~ 54743005 (+)
AMCG00004604 NA other upstream 189383 54600618 ~ 54629219 (+)
G9522 NA other downstream 246854 55074046 ~ 55074459 (+)
G9532 ugdh,LOC107757604 other downstream 300486 55127678 ~ 55128052 (+)
AMCG00004632 NA other downstream 467983 55295175 ~ 55361709 (+)
AMCG00004634 NA other downstream 548903 55376095 ~ 55459404 (+)
AMCG00004644 NA other downstream 740940 55568132 ~ 55605485 (+)

Expression


Co-expression Network