AMCG00004632


Basic Information

Item Value
gene id AMCG00004632
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55295175 ~ 55361709 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004632
atgaatctgACCACGTCGCAGGCCATGAAGGCAGAGAGTGAGGTTGTGTTTGCCGAGCTGATGTGTTTCCTCCAGAGGACGCAGGCGGAGcATTTCCACAGTCTATGTGCCCCCCTCCCACCTGGAGAAATCCTCAACGCCTCTCTCAGCCCTGAGCTCTCGTACAATGACGATGACGTGTCCAGTCTCAAAGCCCCAGAGCCCAGGACCAGAGAAGAGCTCTTAAAATTGCTGCTATGCTTCATGCTAGTCTCCATCCCAAAACCTCCAAATCCACCCTTGGCCGAAACGCTTTCCCTGGATCGTACCATGTGGAAGTGGTTGCTGCTtggctgtgtgctgctgtgccaGGCAGATGAGACACCGGTCTATATAGTGACATTCCCTGCAGTGATCAGTGGAGGCTCCCAAGCCAAGCTCTGTGGCAGCCTCCTCCATGCCAACGAGACCCTGCACCTGTCTGTGCCTCTGATCTCCAAGCAGAAAAACAGGACACTGCTGGACACGAGCACAGAGGGAACGTTCACGGGCTGTGTGGATTTTAAGATCCTCCCTGACTTGCTGCATCTTGCTATTGCAGTGAAATTAGGCAAGGTTCCCTTCAGGCTGCCTGTGGATTACACAATGGCTCCCACTGCCCAGATGCTGGTCTATACTGTGCTGCCAGGTGAAAAAATCATAACAAACAGTTTTGACTTCCAAGTGGAGAAGTGTTTGCCCAGCGAGgtgtCCCTCAAGTTCTCGTCCCCTGAGGCCCTCCCTGGAGGTCAGAGTGCCATGCTTCTCAGCTCTCAGCCTGGCTCTCTGTGCTCCTTCAAGGCCATCGATCAGAGTGTACTGCTGCTGGATAGGACGAATGAGCTGACCATTGACTCGATGAAAGTGACTCTGGCCAAGTCATCAGACTACAATCTGGAGCCCTGCAAAGGGTGCAAGTACACTTCCTGTCTCTGTGCCAACGAAGCAAAGACCTTCCACTGGACACTGGTGCCTTCTGCTCTTGGATCGGTGAACATATCAGTGAGTGCAGAAGCGATACACACCGAGACCATCTGTGACAATGAGCTGGTGACTGTGCCTGAACGAGGCCACATCGAACCGTCATTCGCCCTCTGCTGGTGGAGGTGGCCCCGCCGCTACCCAGAAGCCCCATGGGCTGAGAAGCCTCGCCTTACCCAGAAGCCCCAAGAGCTGGGAAGCCCCGCCTTACCCAGAAGCCCCACGGGGCCAGGAAGCCCCTCCTTACCCAGTACCCTTTAA
>TU11886
TCCTGTCTCTGTGCCAACGAAGCAAAGACCTTCCACTGGACACTGGTGCCTTCTGCTCTTGGATCGGTGAACATATCAGTGAGTGCAGAAGCGATACACACCGAGACCATCTGTGACAATGAGCTGGTGACTGTGCCTGAACGAGGCCACATCGAACCGTCATTCGCCCTCTGCTGGTGGAGCCTGAAGGGATGCAAAAGACCATCATTCACAACTGGCTGCTGTGCCCAACAGGGAACGTAGCGAAGGAGGAGGTTCAGATGCAGCTCCCAGAAGTCATTGTGGAGGGATCTGCCCAAGCCTCCGTCTCTGTTTTATGTATAATCGGCAGacactgcacagctcactcTGTTCAgctacactcac

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004632 True 1260 mRNA 0.55 12 55295175 55361709
TU11886 False 366 lncRNA 0.53 4 55345109 55351576

Neighbor

gene id symbol gene type direction distance location
AMCG00004624 NA coding upstream 123963 55157066 ~ 55171212 (+)
AMCG00004626 NA coding upstream 140961 55150739 ~ 55154214 (+)
AMCG00004623 NA coding upstream 222094 55072497 ~ 55073081 (+)
AMCG00004619 NA coding upstream 285855 55002426 ~ 55009320 (+)
AMCG00004614 tagln,LOC106567831,LOC101483357 coding upstream 321333 54964810 ~ 54973842 (+)
AMCG00004635 NA coding downstream 62726 55424435 ~ 55431470 (+)
AMCG00004636 NA coding downstream 117237 55478946 ~ 55481056 (+)
AMCG00004639 NA coding downstream 129459 55491168 ~ 55522237 (+)
AMCG00004638 NA coding downstream 187546 55549255 ~ 55554220 (+)
AMCG00004643 NA coding downstream 269886 55631595 ~ 55652721 (+)
G9569 NA non-coding upstream 31907 55263043 ~ 55263268 (+)
G9531 NA non-coding upstream 167872 55127028 ~ 55127303 (+)
G9527 NA non-coding upstream 171658 55118993 ~ 55123517 (+)
G9526 NA non-coding upstream 178681 55115004 ~ 55116494 (+)
G9525 NA non-coding upstream 180261 55114351 ~ 55114914 (+)
G9644 NA non-coding downstream 201572 55563281 ~ 55572079 (+)
G9718 NA non-coding downstream 415079 55776788 ~ 55780421 (+)
G9721 NA non-coding downstream 427100 55788809 ~ 55789057 (+)
G9723 NA non-coding downstream 448674 55810383 ~ 55858397 (+)
G9749 NA non-coding downstream 533959 55895668 ~ 55896523 (+)
G9532 ugdh,LOC107757604 other upstream 167123 55127678 ~ 55128052 (+)
G9522 NA other upstream 220716 55074046 ~ 55074459 (+)
AMCG00004610 NA other upstream 505413 54783746 ~ 54789762 (+)
AMCG00004609 NA other upstream 516272 54768610 ~ 54778903 (+)
AMCG00004608 LOC103361032,LOC104918006,LOC103372158 other upstream 529346 54744714 ~ 54765829 (+)
AMCG00004634 NA other downstream 14386 55376095 ~ 55459404 (+)
AMCG00004644 NA other downstream 206423 55568132 ~ 55605485 (+)
AMCG00004642 NA other downstream 245830 55607539 ~ 55613041 (+)
AMCG00004650 NA other downstream 396562 55758271 ~ 55801268 (+)
AMCG00004673 NA other downstream 953903 56315612 ~ 56359797 (+)

Expression


Co-expression Network