G9527


Basic Information

Item Value
gene id G9527
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55118993 ~ 55123517 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU11814
CACCTGGAACCCAACACTGTGCAGTTTGGGGTGGAGATCGTCCAGAACTCTCCTGCCATCAAATATGAAGGCTGGTTTCAGCATGGTCTTGTAGATCCTGTCAAAGTCCATCTCCTGCACATAGAGAAATAAGAGAATTAAAACAACCTGAACATGTCAAGCAGGGGGAATGGTTATTCCCCTATAGTAAGCCCCAGGGGTGTGTTGTGACCATTAAGCAGGCGTACACTGAAGGGTCACATTTCaacactttaaaacatataaactgACAGATATCTCTTGATGGAGGCTGTGCCATCATTAAAAGCACTACATTCAATTGATTTGCGATAGGTTTATCTCGAAGTGTGCCGTTCGAACTGAAACAGGTGACTGTTTGTCATGGTTAGAGAAAAGTAGTGgatttaaagtaaaatgcaaCCGATTTAAACATTGCTATGAGCATCGTGCTTCATCCACATAACCTAACATATCTGGCTTACTGAGCATACGTTTATGCAAAAAGGTCTAAACTTAATCCTGAAAGAAAACTGAATTTATAATATCAGTAACTGGCCTAGCACTGAATTCAGCACCGTGCATCTTGCTGGTCAATTAACTCATCATTGACTAGTCTTACTTCCTTCTAAGTCATATCTAAGTTTTTAAGTTCATCccttaaatgaatacattcttaTCCAAACCCCTGAGTTGCTCTTAAGACGTCTGACTTTTTGATCAGACACGCTTTCATTCATCTGTTTCACACAATATAATCCACTACCTGAAGACCAGGTTTGTAGTCTCAACTCTCTCAAGCGAGCACTATGTTGTATTTAGACTGTAGCGGACATAATGACTCTCTATATGCTGCCATTTCTAAAAACACAGTTTTAtgcatcattttatttctgtcctgTAGGTGGCGCAGTCACCTCGGGCTGGAGTGTCGGCACAGCATTGATCTGAACTGACCTTGTTATTGCGAAAGACAAAACACTGATTCATacagattgtactggaataagaaagttaGTATTTAACgtgtgaaaatacacacactcactgtgacATTAGCCAATTCTAAAAACCAGCACAGGCGAGTGGCATTATCGAGTGATGTAAAAACTGCAATGTACTGCGATCTAAGTGACATTtctcctcctttctttcttgaATGTGGCCTTGCTTATTGCGCAAATCTCCCGTGTGGATTCACTCCTCTGTTGTTGTAAAGCACAAAAGAACAACGCTGTCTTCCCTGTTTTTCCCCGCCGCCATGGGTACAGTACACTTCACATTGTCTGTGTTAAGACCATGAAACTCTTAACACTGGGCTGACCTGAGAATACAGTCGTCAGTGCAAAACCTGTTGGATAGGTCCTCCTCTGTGAAATCGTAATGAATAAAGACATTTCAATCAATAATTCCATCCGGCAGCACAACTTGCAAACTCTTTCTGTGGAGACTGAAGGAAACGCTTGCTCTATGTGTACCCTCTAAGTGTGAGTGGATTAGTGGTGAACGCTTTGTTCTAATATGTACAAAAGGATTAAAAAATGCTGCTTATGAGACGGCATGGGTTACCCGAGTATAAGCAACTAGAATTGTCTGgcgaataaataaaaatcattaaaaacaatcaccCCATAGTTAGGAGGAATGGTCCCATCTAATTCTCGAATGACTCCATAACAGGAGCCATACTGAAGCAGCGGTACCTGGCTGTATTGCTGGGACTGTTTCAGAGAACGGGCCAAATTTGTCTTACCTTGAACATGTCCCACTCTGTGCAGATGACCAGAGCGTGGGCGCCTTCGCACGCTTCGTACGGGTCCTTGGTGACGGTCACCAGCTGGGACACTGGTCAAcacacaagacaagacaagggCATTGGAGTCCTCCCTGAGCACAGCCTGAATCTGAACCTTTAATGTGTAATGCCAGTGACATCAGAGAAAGCAACATGCACTTCACTGCACTGTGAgcatatttgaaataaagagAGCATCAGCCTGTAACTCTGCGATATTCTCATACACCCCACGGTGAGAGAGCACTCCGGAGGGAGCTCAGCTGTGTTCAGGTACAAACAGCACCTTGTGAGCTCGGCTGCTCTTGCGTTCACACTGGTCTTTTGGGAAAGGCACCTAAGGCGTATGACACCCTGGGGGAATGGTCCAGCTCGCTGCCTGTGAAATGGAGATGTAGATACTGGAGGACTCTCTGAAACACGTGAGTCTCAGGCAAAAGTAGTTATTATTCTTGGGCCCAAACATGGCTGCTTGTAGCACTGTCATTTGTACTAGGGGCGTACAGCACAGAGGTTCCTCTGTACATCtcactgtgtgtgctgtgtgtcaaGACCCCTCTGCAACATTAGCAACCTCAtcacaaacatgtttaatatccaATTACATAACTTAGGAATGCAAAGCCACATATAACATGCCTTCTTGTgagaaatagttttgttttacttgttccACTGTCCAGGAAGGAAGACGTGTAGCAGGGAGTACCTGTACGTTGTGAGATGCAATGGACTGGGGCTCCACAGGCCCAGAGCTAGACTGACCCAAGAACTGTAgtcagggaataaaattaacacccacCACCCGCCAAATGtgggtagatttagccagtggcgggtaaatctgtcaatcttaccagccactttggcgggTAGGCAACAACTGGGCGGGAACTCAACTTTTAGATTCTGATAGAGTATTTAGTCggtatatttcaaaatatgcatTACTTTGTTGACGTTGCAGTGTTTGTATGTTAATTGATTTGGCAAAccgcaatatcatgttttttggaaatatatggcatctggacagtcttcggtccaggaggacatatttcatggcgagcaatgaagcagaaataaggtggttaaggatgtggaaaaataatgatttttatttaattacttttcatagtcattaTTACTGACttttaattacctggatcaaagtgtttcagaactatgacagaaaaggaaagagcagcaacaaacacattaatacacacacagccagctattgctatttattttgtattcgctGGAACTCGAGCGCACAGTTCTGTTTCGAGCGCAGAGCAgcagtctgagtgtggtttggagaggaaaagtcaatcgtttagtcaagtagattgCATAAATTAGCTAGAAAGCTAGGtcttaattattttgcatttcgctgttgtgaccggaaaacattgccacaggacgctaatgttaaggcattttcattgcagctcacattgctaaactggcaattgaatgaaaatgtataaaaaatgaaaaaagaaaaacatattggtcggtcagttacagctgtaactgcaaaatattcctttataaaacaaatagtcacaacatttatagttaatttgaatttgtgacaataaaatgttgtgataatgtcgggacaataatacaagagtcaGACACGAGATGCGTGaaagttgacaggtctgctgttattatgccatttccatatggcttctaatgtatttttacatagatatttatttaacaaagttgttgtgttagataagtattcattaATTGCATcgattacaatatattattttatggggaaacgatttgcgatagagacatgcattttCTGCTGGATAGTGGAGATTCTGCACgtgcagtttgtttacattgcttcTTTGCTGGCGTGCATCGTATTGCCCAATGGAAAGGACattactgtctgtcatcattcatagagattatattttttacccaaccacagaccgtgactctatgaatatctagccaatccaattaaatccttttaattacgtgcagagacccagagaagggagtagcactgaagaggaagaggagtatgaagagcaataatgtgtcaccatataacagcccttctcatgtgttagtttagtgtgtttatacagatccccattagctgccatgttattgcatatgtgattgattaacttgaaaacgatgctcccgcctctactagcaagtgttcaatagaatgcaatgttttgatcaaagaccttataacacttgcaagcaGAAACTGTGTGGCAGGATGTtatttctatccagatccttttccctcatacacatctgtctagtctatacaggtgtgcaattagcttttgttatagtgtttgtttaattacctgaataaatgccacgttttaacatgttcaccacacatgtACACACCCTTATGAATTTTTGTGATGTTTgcaaaataccaagtggctggtaagttttttccttataccagacacagtggctagtggccaaaaaagtaaattttatcCCCTGACTGTAGCATATcgtaaagtattttatattttatattaacactgCAGAACTTCCCGGGGACGTGGAGATGCTTTACCTCTCTCAGGGTTGTCCTCAGAGATGGTGGGGTGAGACAAATCCTGGATGATTTGTTCCTTCAGCACCTTGGGGTCGTAGATCTGCAGCTTGGCCCCTTCGTCCATCAAGTACTTGGAGATGTAGATGCTGGAGGACTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11814 True 4525 lncRNA 0.41 1 55118993 55123517

Neighbor

gene id symbol gene type direction distance location
AMCG00004623 NA coding upstream 45912 55072497 ~ 55073081 (+)
AMCG00004619 NA coding upstream 109673 55002426 ~ 55009320 (+)
AMCG00004614 tagln,LOC106567831,LOC101483357 coding upstream 145151 54964810 ~ 54973842 (+)
AMCG00004616 NA coding upstream 160035 54958320 ~ 54958958 (+)
AMCG00004612 NA coding upstream 165872 54951667 ~ 54953121 (+)
AMCG00004626 NA coding downstream 27222 55150739 ~ 55154214 (+)
AMCG00004624 NA coding downstream 33549 55157066 ~ 55171212 (+)
AMCG00004635 NA coding downstream 300918 55424435 ~ 55431470 (+)
AMCG00004636 NA coding downstream 355429 55478946 ~ 55481056 (+)
AMCG00004639 NA coding downstream 367651 55491168 ~ 55522237 (+)
G9526 NA non-coding upstream 2499 55115004 ~ 55116494 (+)
G9525 NA non-coding upstream 4079 55114351 ~ 55114914 (+)
G9524 NA non-coding upstream 28352 55090381 ~ 55090641 (+)
G9521 NA non-coding upstream 58689 55060090 ~ 55060304 (+)
G9464 NA non-coding upstream 316558 54801977 ~ 54802435 (+)
G9531 NA non-coding downstream 3511 55127028 ~ 55127303 (+)
G9569 NA non-coding downstream 139526 55263043 ~ 55263268 (+)
G9644 NA non-coding downstream 439764 55563281 ~ 55572079 (+)
G9718 NA non-coding downstream 653271 55776788 ~ 55780421 (+)
G9721 NA non-coding downstream 665292 55788809 ~ 55789057 (+)
G9522 NA other upstream 44534 55074046 ~ 55074459 (+)
AMCG00004610 NA other upstream 329231 54783746 ~ 54789762 (+)
AMCG00004609 NA other upstream 340090 54768610 ~ 54778903 (+)
AMCG00004608 LOC103361032,LOC104918006,LOC103372158 other upstream 353164 54744714 ~ 54765829 (+)
AMCG00004606 NA other upstream 375988 54724756 ~ 54743005 (+)
G9532 ugdh,LOC107757604 other downstream 4161 55127678 ~ 55128052 (+)
AMCG00004632 NA other downstream 171658 55295175 ~ 55361709 (+)
AMCG00004634 NA other downstream 252578 55376095 ~ 55459404 (+)
AMCG00004644 NA other downstream 444615 55568132 ~ 55605485 (+)
AMCG00004642 NA other downstream 484022 55607539 ~ 55613041 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1496921 NA misc NC_048581.1 CM023235.2 82629246 ~ 82661638 (-)