AMCG00004634


Basic Information

Item Value
gene id AMCG00004634
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55376095 ~ 55459404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004634
GGGAGAGCAACACTTGTGACTACTCTCTCTTTTGCTGCTTCTAACCTCTCGCTTCAGCCTTCCCTGGATCGTACCATGTGGAAGTGGTTGCTGCTtggctgtgtgctgctgtgccaGGCAGATGAGAAACCGGTCTATATAGTGACCTTCCCTGGAGTGATCAGTGGAGGGTCCCAAGCCAAGCTCTGTAGCAGCCTCCTCCACGCCACCGAGCCCCTGcacctgtctgtgtctctgatgTCTGAGCAGGGAAAGAGGACTCTGCTGGACACGACCAAAGAGGGAACGTTCACGGGCTGTGTGGATTTTCAGGAGCCCGTATTAAACAGCAGTCTGTCATGATTGAGGGCTGCAGTTCACAACCTGAGCAACACTTATGCTGCTGCCCTGCTCGCTTACACCTTCACCATGGCTGGGGAGGCGGACACCCAGGCCAGCCTTCTCGCCAAGCTGGATGTGCGGGACACCACTGAGGACGCGCCACCGAGGGATTCAAATCTGTTTGCAGTCCAACTGGGAGACTGGTGCTTCACTTCTTGGAGGCAGATCCGCGGCGCAGGCGTTGTGTGGGGCGCTGTTGTTGCTGCTCTTGCTTCACTTCAGAGGCACAGAGCTCCCGGTCACGTCCACACATCTGCTGTCTCGCTCGATCGCTCTGGTCTGGCTTCCGCTTCCGGAACTTGCAGCTTCTTGAAGTATGCACTTCCAAGCCAAACTAGTCTATAGTGCAAACAGCGGTGTTCAACAAAGAGAGCACAATCACAGTGATGGTGCGGTCAACGGGGGGAGAACACCACCACTTAACCTTGGACCAAAGCAACAGCCTGCTGTACCAGGAGAAGGAGCTGCTGGATGTCCTGGGGCGGTACAGTGTGGAGGCGGAGGGCACAGGCTGTGCATCTATTCAGGTATGCTGGCCCAAGGGAAAACACCAACACGGTCATTCTGAACTTCAAACTCCTCTCTGGATTCTTCATTAAAGAGACACCTCTTAcaagtgtagtgtgtgtggttCCTCAGTGTGAACAGTTTCAAAGGGGCCACAGAGTGAGAGCAGCTAGACAGGTGAGGGTACATCCTCCGGTGAAGCACATGGACAAAGAAAACGGGCATGTGATACTGTATCTGGATGGGGTGAGTTCCTTACCTGGAATTCattgggtttcatttttttatatatacccTATGCTTAATACATTTATACTGGATAATGTTGCATACACACTGGGCACGAGCGAGCGATGTCGCAGAATTCCATTTTACACTGGACATAAGTCCAGACGAATAACCAAGCCTATGCATTTATATTGGACACTAACCTAGACTATCCCTCCAGCTGTTTGGCAAAGCATAGACCTGctctgaaatataataaatataattgtagcTGTTCCgtaaatgtttttctccttAATCAGAACCAATTGATTGAAGCATGGGTACAAATAAGTTAATTTGTGCTGTCAAGTGTTTTCTTTGTGCCTCTGtagataatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacattgcaaagagctgtatattaaaaaacaaaacaatgtcaatAATGTACCCCTATAATGTTTGCTACTGTGCTATGGCACAGGAGACCCAGGTTTAAATCTCACAGTCTCATAAGTGGCcacttatatttatattatttatatttatattaagtatgcaccttaaaaatataaaaataataatactgcacaAAATTAAGTTGCCATTCTGCAGGGtatgaaatataatacacaGTTTGACTGTGAAGTTCTCAAAAGCAGTGCTTTCCCTCAGGAAATGTATGCTGTTATGTTACCAACCTAGAACTATTACCTCACatacatttgacttttaatGTATCTACAActatttgaaacaatgttatttagtGATTCATGTAGACTAATAATTACTCcttattaaactgtaattttgtATCAAAGACGTATTTTTGATCGTCACTCATTCAGCCTAGGGAAATTTAGTTGGATTTCTATGGAGTGGTAGTCATCCAACTAAATTGATGGGAGATTTCCCTAGGCTGAATGAGTGATGAGCAAAAAGATTTATTtgataaacaatattttctatGGAGTGGTAGTTGAATATTTAATAGAACTGGAATCTAGACTTTTTCCAGCATTTTGGCACAAGAAACAGACCAGCTTTCATTCATTGATAATGGATTGTAAGAAATATCATGGGTGATGTAGACATTGTATTGTTGCTAAGGGAACCATGATCAGCCGTAAGTATTGTGATATCTCTTAAAACAATATACTGTCAGCACTGAGTGAATTTTAGGATCTGCAACAGCAGATAGGTCTCTCAACAGCTACAAAGGGGAGAACCTCATCACTTTGACATCAGCATGACCCAGACTCACTCAGTAAAGAACCTCAAACCAGCTGCTGTCAAGGTCTACGACTACTACCAGACCAGTAAGACTGTTTAATTAACAAGAGGCCCAGTGAACTGATGCATTACAAAGTGGTAGTGGTAGGCCTGCCATAGCAGAAGAATTGGCAGGATAACTCTCTGGTTATGAAATGTCCTCTCCCTGGGCACTGTACTGGAGCGGAGTGCAGAACACAGATGAGAGCAGAATACACAGACTGGGATCAAAGACACAGCCAAAACAGTATGGCACTCCCCTTACTTTGGTTGTCCACATCTGTAAATGGTGTGTGCAGTTGATCAGATATCTTCAGCACTGAAGAGTTCATATTTCCACATCGTGGAGAACCTGGTCCCAGTTCATTACTCTACATTTGGACAACTGCAAACAGTTATTACCTGTTCATTAAAATACTGCTAATAGTTAATTCAagtttgcaatgtttttaacaGCATCTCTATATAGCATGTTCTTTGGTACCATCTATTACTGGTAGATGGAGACTACTCTCAAaactttaatataatgtattgctCCTAAAATAAGAATACTGGAAAGCTGAATAGTAAATATCCTGTAGGAGGCTGTGCAAATTTCAGCTCATATGATTCTGTCCCTCACAATGTGGAAAATTGTGTGATGGTGTGATAGCAGTCCTTATGTCTTGTAGATGAGCAGGCCATGTCTGAATACACCTCTCCATGTCTTGATGGTAAGTCCGCAAAATCTGTAATTCCCTCACCTTCATTGCTGATTGGATTGATTGGCTGCATTATCACTGCATGTGAAGTGATGCATAGACCTCGCAGCAAAGTAAAGGTATTTTAATAAGTAATAAATCAGAAAAGGGGGAGGACTGTACCATCTATACTGTATTGCTGCTGCAAAGTCACTGCGTACAAGACAGGAAGACGCTTATTCAAAGGAAAGAGCTTAAGGATGTTCATTTCTGAGCAATCAGAAAGACCTAAGAATCAATTCTTGTCACAGGCATGACCTATCTTCATTcacaattaatttttaaaattgaaaagcaTTGGACCTACATTAGCTAAACATTAGCAAAGTGTTCAGGAGTAATAATTAGGTTACTGGTTACCATCAATCCCTTTTGTTTCAAATGGGTTTTAATGTGAGGGATTCTCACAAGAGATGAGTTCATTTTATTCAAGTTGCATCTGTTCCTCTACTGCAGATCAAGAGGACATCAATGAAgtgtaaaagcagaaatgtggaCTGCAGAAAACAATCAACCAATGGTGTGGAGCCGAAGATTGACAATCTTCAAATTACTGAATGTCttgtgtattcatgtatttaatacaGTGCACCACAAAcccacatctcttcctgtcatTTATCAATGGAAGATGCAAAGGTTATTTCTGGACTGTTCATGTCTAGAGACGAAGATACGCTCTCCCAGGAAATGcagcaaactgaaaacaaccCAAGTACCACACTGATATCACAGAAGCCCGTCAACCCAGTCAAACTATTAGgtcacaaaataatttaaagaactGTAAACCCCAAAACTCAACACAATAAGTTATAATCGTTGTAAgtctttcaaaaaataaataacaaagcaaaaacacataatactgggaaaaaactaaaacaaaaaacaaactgcaataccCCCTGCTGCCACTAAAACGCTCTTG
>TU11894
GTCCTAGTCCACTCTGTGTCAGTCCTGTAGGGAGAGCAACATTTGTGActcctatctctctctttctgcttctCTCCTCTCGCTTTGGGCTTCCCTGGATCGTACCATGTGGAAGTTGTTGCTGCTcagctgtgtgctgctgtgccaGGCAGATGAGAAACCGGTCTATATAGTGACCTTCCCTGGAGTGATCAGTGGAGGGTCCCAAGCCAAGCTCTGTAGCAGCCTCCTCCACGCCACCGAGCCCCTGcacctgtctgtgtctctgatgTCTGAGCAGGGAAAGAGGACTCTGCTGGACACGACCAAAGAGGGAACGTTCACGGGCTGTGTGGATTTTCAGGAGCCCGTATTAAACAGCAGTCTGTCATGATTGAGGGCTGCAGTTCACAACCTGAGCAACACTTATGCTGCTGCCCTGCTCGCTTACACCTTCACCATGGCTGGGGAGGCGGACACCCAGGCCAGCCTTCTCGCCAAGCTGGATGTGCGGGACACCACTGAGGACGCGCCACCGAGGGATTCAAATCTGTTTGCAGTCCAACTGGGAGACTGGTGCTTCACTTCTTGGAGGCAGATCCGCGGCGCAGGCGTTGTGTGGGGCGCTGTTGTTGCTGCTCTTGCTTCACTTCAGAGGCACAGAGCTCCCGGTCACGTCCACACATCTGCTGTCTCGCTCGATCGCTCTGGTCTGGCTTCCGCTTCCGGAACTTGCAGCTTCTTGAAGTATGCACTTCCAAGCCAAACTAGTCTATAGTGCAAACAGCGGTGTTCAACAAAGAGAGCACAATCACAGTGATGGTGCGGTCAACGGGGGGAGAACACCACCACTTAACCTTGGACCAAAGCAACAGCCTGCTGTACCAGGAGAAGGAGCTGCTGGATGTCCTGGGGCGGTACAGTGTGGAGGCGGAGGGCACAGGCTGTGCATCTATTCAGGTGAGGGTACATCCTCCGGTGAAGCACATGGACAAAGAAAACGGGCATGTGATACTGTATCTGGATGGGacgcccttatccagggtgacttacaggttaAATGAACATTGGAACTGACTGGGATTGGGACTAGGTGAAGATGGAACCTACAGAACAAGAGAGACAAACCAACGAGGTATTTCTGCACCAACAAGTAGCACAATCTTAAAATGGAACATTAAATGTTCTAGGACACAAGAAGTTGTGAACCATTTTTACCAATTCATTTGTACCCACTTGTTGTTTATCCCTTATCAAAATGGTAGACAGATCTCAAGTTTCTTTGAACCTTATGCTCTGAATTAATCTTAATTAAGATTTTCAGCATTTCAACATTTTGCTTTCCAACAGATTTTAAATCATCACCAAggcctttatttttttcctatttttccaACCAGTTGGATTTTCATACCTCCTGGAATTGTCATTGATGGTTTTTGGTAGTATATTGTAAACCAAAAATAAGCAATTTTTTCTCCCGTCAAACATGTCAGCTCTGATTCGCTGTGTCTTTGTGCTTGACGTTTTCCACAAGCTTTTAGCCAGGAAGGATAGAAAACGGCTATCTCAGACATCTCCTACTCAACCGGATCGCCCGGGCAGGAGGTGGGGTTGCAAACAAGGCTACGGCAGGGGAGGATGGTCagaactcttcccacactggccGCAGGAGCTCTCCCAGGTGAACTTGCTGGTGTCTCCGTAGGCACTCAGGGCTggtgaagctcttcccacactgggcacaagGGAAGGATCTCTCCCCAGTGTGGATACGCTGGTGGGCTTTGAGGTTCCCCGAGTGGCTGAAGCTCTTGCCACACTGGGCGCAGACGTAGGGCCGCTCACCCGTGTGGATGCGCTGGTGCCGCTGCAGGTCCCCAGACTGGATGAAGCACTTTCCGCACTGGGGGCAGCGGTAGGGTCTCTCCCCTGTGTGGATGCGCTGGTGGGCCTTGAGGTTCCCCGGGTGGCTGAAGCGCTTTCCACACTGGGCACAACAGTAGAGCCGCTCGCCCTTGTGGATGCGCTGGTGGATCTTCAGGTTGCCAGCCGTGCTGAAGCTCTTGCCGCACTGGGGGCAGCGGTTGCTAGAGTGGGCAGTAGAGCGGGCGAGGTGGCTGGACGAGGGAACTTGGGGATGGGTGCTGTGGGAGGGGCTGTGAGGCATCGCAACTCCCTCTGTCCCACCTCCGCCCTGCCCCTTGCCTGGGCCAGGCCTTAGGAGCTCCCAAAAGTCCCGCGGGACACCTTGCCCCGGCCCCCATCCTAGTCGCCATTCCGCCCCTTCTCCACATGACCGCCTGAAATTAACATCCAGCTCTCCAGTTGGGCATTCCTCCCCGTTAACCTGTTGGGTCTCAATCTCCTCTTTGATGACAACAGACATTAACTCATCCACCTCTGGGTCAATGTGGGGGCAGGATCCTGGGTGTGGGGGTACTTTATCCAGGGCCTTTTCCTCTTTCGATCCACCGTGATGCATCTCAGACCCAAGAACAGACTGCAGCTCAGTCTCCTGTTCTGCTATTAGAAAGTCCAGCCCACTCATCTCCTCCTTTCCGTGCCCACAGGCTTCACTGTGACTGTCATTCCCGGGGCCCAAACCCTCTGTGTCAGCCATGTATACAGACTCCAGCCCAGGAAGGTCCTCTAGTCTGGGTCTGTGCTGTGGAGTGAGCTGCCGATGGCCTTGTGTAGGTGTGGGCTCCACGTCCAGCCTCAGACTGCAGCCCCACTCCAGTTCACAGTGCTGCGGCTCGGTGGGAGACACGGAGAGAGCTGCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004634 True 4073 mRNA 0.42 6 55439559 55455137
TU11894 False 2767 lncRNA 0.54 6 55376095 55459404

Neighbor

gene id symbol gene type direction distance location
AMCG00004624 NA coding upstream 204883 55157066 ~ 55171212 (+)
AMCG00004626 NA coding upstream 221881 55150739 ~ 55154214 (+)
AMCG00004623 NA coding upstream 303014 55072497 ~ 55073081 (+)
AMCG00004619 NA coding upstream 366775 55002426 ~ 55009320 (+)
AMCG00004614 tagln,LOC106567831,LOC101483357 coding upstream 402253 54964810 ~ 54973842 (+)
AMCG00004636 NA coding downstream 19542 55478946 ~ 55481056 (+)
AMCG00004639 NA coding downstream 31764 55491168 ~ 55522237 (+)
AMCG00004638 NA coding downstream 89851 55549255 ~ 55554220 (+)
AMCG00004643 NA coding downstream 172191 55631595 ~ 55652721 (+)
AMCG00004645 NA coding downstream 212554 55671958 ~ 55681643 (+)
G9569 NA non-coding upstream 112827 55263043 ~ 55263268 (+)
G9531 NA non-coding upstream 248792 55127028 ~ 55127303 (+)
G9527 NA non-coding upstream 252578 55118993 ~ 55123517 (+)
G9526 NA non-coding upstream 259601 55115004 ~ 55116494 (+)
G9525 NA non-coding upstream 261181 55114351 ~ 55114914 (+)
G9644 NA non-coding downstream 103877 55563281 ~ 55572079 (+)
G9718 NA non-coding downstream 317384 55776788 ~ 55780421 (+)
G9721 NA non-coding downstream 329405 55788809 ~ 55789057 (+)
G9723 NA non-coding downstream 350979 55810383 ~ 55858397 (+)
G9749 NA non-coding downstream 436264 55895668 ~ 55896523 (+)
AMCG00004632 NA other upstream 14386 55295175 ~ 55361709 (+)
G9532 ugdh,LOC107757604 other upstream 248043 55127678 ~ 55128052 (+)
G9522 NA other upstream 301636 55074046 ~ 55074459 (+)
AMCG00004610 NA other upstream 586333 54783746 ~ 54789762 (+)
AMCG00004609 NA other upstream 597192 54768610 ~ 54778903 (+)
AMCG00004644 NA other downstream 108728 55568132 ~ 55605485 (+)
AMCG00004642 NA other downstream 148135 55607539 ~ 55613041 (+)
AMCG00004650 NA other downstream 298867 55758271 ~ 55801268 (+)
AMCG00004673 NA other downstream 856208 56315612 ~ 56359797 (+)
AMCG00004681 NA other downstream 1030689 56490093 ~ 56499584 (+)

Expression


Co-expression Network