AMCG00004650


Basic Information

Item Value
gene id AMCG00004650
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55758271 ~ 55801268 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004650
ATGGAGAGTTCTGAGATGAACAGTAATCACAAAACTGCAGAGTGGGACTTCAGGAAATCCATTCTGGCCCCTGACCACATTAAACAAGAGACAAGTGAAGAGGATCTTGAGAACTCCGAAAAAAACGCTCACACACAGCGAGGGGACCGGGCCCAGCAGTGCTCCAATGCAGCAGCCTGTGAGGCCAGGCTAGGGTCTGATCAGATTAAAGTAGAGATCGTGGAATGGGAGTCTTTTACCATAGTACAGGTAGGAATGGACGAGTCTGCAGAAAGCCTCCCAGGTGAACCTGAGGGCTTTGCAATAGAACTCTGTAAATCTGAGCCTGAGGAGCCAAAACCTGATGTGGAAGGTATTGAAGAGCTGGAATCTGCTGATGTTAAACAGGAAAGCTGTGGACTCCTTCACAACGGGGAGGAAGCTGAGATGCACAGTGACGCATTTGCCCCCTATTCACCACAGATGTGTAAACTGGACCCAGAGTGTTTTAATCCAATGGAGGATTTCCAGTTTGAGGGGCTGATTGTGAAGGAAGTTGTAGCTCCAGATGAGCACCAGCCCAGCACTTCAACTCCTGTGAGACCCATATCCACTAAGCGCCACTGCACAAGGAGTCGTAGTGCCCTAAAGCGCTGCTCGCTGAAGCGTTCTGCCCCGGCTCGCCGCTTCCCTGTGCGTTCAGCCCCTGGGCGCCGTGGCCAGTCTGACACGGCCACATCTATACGTACTCACAACGATGCTGACCGCGATGCGCCACCACCATTCCCCTTCCAGCCAAGACGACCGGTTGGAATTGACATCTCTGCATTTCCACAAAgaTGGGACCATCAGAGTAATCGTGGGGATATCGGATGGTGCCGCATCGAGAGAGGAGACATCCTGGCTCTTCAGTGGAACGACACTCGTACCGTTACATGTTTGTCGACCTTCCACAGAGCTGACAAATCGTGCGACGTGGAGAGGATGGTGAAAGTGGAGGGCCAGTGGGCTCGAAAGATGCTAAGACAGCCTGCCGCCATTCACGACTACAATCAGCACGTGGGTGGGGTAGACAAATCTAACGAGAGAATTGGAACCTACCATGCTCTCCACAAGTCCAAGTGGTGGAAAACACTGTTTTTTCACTTCATGGACATTGCAATAGTGAATAGTTTTCTGCTGTTCCAGGAGTGGCGAAAGAAGAATCCTAATGTGGTCGGATTGCAAAGAGAGGGGGGGCAGCCACTCTGCACTTTAATAGAATCCCTGTCCGAAGAAAAATTATTTCAGGACCCGGAGCAGTTGCATGTAGGCATTCGCTTCCTGGACATCCGCTGTCGCCATTTCAATGATACCTTCCCAATTCACCATGGGGCATTTTTCCAGCACGCTAACTTCAGTGGTGTAGTGAAAGAAGTATCAGCCTTCTTAGATCATCATCCAAATATATGGGCCACCACCGTAGTGGAGGCAGAAGTCACACCCATATTTGCCATTAAACTGCTTCGTGTTTCTCAGGAGGGGCGGGCAACTGAATCTGAGGAGCAGAGGAGTGAACTATCTTTGCTTCACCCCTTGGCTGGAAGTGCAGTGACTGTTCCGAAGAGGGCCTTCCAGCAGCTGAACAGATCTCGCATGACCATTTTTGCCCGGGAACTGGCTGTCCTGGTGTTCACAAAGGAAATCCTTGCAGAGTCCACCCTGACAGGGAAATCTGGGAAAGGGGGCTCTCAAAAAAGTCAGCTGGATTTTGCCAAAGTGCAGGCCATAACAGcgttcttttaa
>TU12050
AATACACAGCCCCAAATGGATGAAGAAATCATGGCATCCCTTCGTGAGCTCCCggaaatgattaaattaatgaaggagtgtgtgtggtgtgtccGGTCATTGATTCGCTCACCTGGCGGGACCCCCTCATCTGCAATGTCATCTAATACTGTAGTCAATGAAATTGAAATGCACCCCTTGGCTGGAAGTGCAGTGACTGTTCCGAAGAGGGCCTTCCAGCAGCTGAACAGATCTCGCATGACCATTTTTGCCCGGGAACTGGCTGTCCTGGTGTTCACAAAGGAAATCCTTGCAGAGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004650 True 1764 mRNA 0.51 9 55758271 55801268
TU12050 False 300 TUCP 0.49 3 55798889 55799931

Neighbor

gene id symbol gene type direction distance location
AMCG00004647 NA coding upstream 29872 55728040 ~ 55728399 (+)
AMCG00004646 NA coding upstream 56654 55701021 ~ 55701617 (+)
AMCG00004645 NA coding upstream 76628 55671958 ~ 55681643 (+)
AMCG00004643 NA coding upstream 105550 55631595 ~ 55652721 (+)
AMCG00004638 NA coding upstream 204051 55549255 ~ 55554220 (+)
AMCG00004651 NA coding downstream 50378 55851646 ~ 55857119 (+)
AMCG00004658 tpi1 coding downstream 182182 55983450 ~ 55989820 (+)
AMCG00004657 LOC104943838 coding downstream 193429 55994697 ~ 56001754 (+)
AMCG00004655 NA coding downstream 214944 56016212 ~ 56035949 (+)
AMCG00004659 NA coding downstream 238607 56039875 ~ 56059971 (+)
G9644 NA non-coding upstream 186192 55563281 ~ 55572079 (+)
G9569 NA non-coding upstream 495003 55263043 ~ 55263268 (+)
G9531 NA non-coding upstream 630968 55127028 ~ 55127303 (+)
G9527 NA non-coding upstream 634754 55118993 ~ 55123517 (+)
G9526 NA non-coding upstream 641777 55115004 ~ 55116494 (+)
G9723 NA non-coding downstream 9115 55810383 ~ 55858397 (+)
G9749 NA non-coding downstream 94400 55895668 ~ 55896523 (+)
G9752 NA non-coding downstream 109484 55910752 ~ 55917209 (+)
G9814 NA non-coding downstream 309089 56110357 ~ 56111372 (+)
G9841 NA non-coding downstream 567762 56369030 ~ 56423357 (+)
AMCG00004642 NA other upstream 145230 55607539 ~ 55613041 (+)
AMCG00004644 NA other upstream 152786 55568132 ~ 55605485 (+)
AMCG00004634 NA other upstream 298867 55376095 ~ 55459404 (+)
AMCG00004632 NA other upstream 396562 55295175 ~ 55361709 (+)
G9532 ugdh,LOC107757604 other upstream 630219 55127678 ~ 55128052 (+)
AMCG00004673 NA other downstream 514344 56315612 ~ 56359797 (+)
AMCG00004681 NA other downstream 688825 56490093 ~ 56499584 (+)
G9889 NA other downstream 736986 56538254 ~ 56542063 (+)
AMCG00004702 NA other downstream 862872 56664140 ~ 56896215 (+)
AMCG00004695 gapdh,LOC107596669 other downstream 984584 56785852 ~ 56801892 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01075328_00001916_00003531 NA coding CI01075328 null 1905 ~ 3657 (-)