AMCG00004657 (LOC104943838)


Basic Information

Item Value
gene id AMCG00004657
gene name LOC104943838
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55994697 ~ 56001754 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004657
atGTCGGAGGTGAGGCAGGTGTCGCTGGAGCAGCTGCTGTCTCTGTCGGGGGCTCCCCTGGCCGAGGCCCTGTCTTCCCTGCTGGAGACGCCTGGCCTGTACGTCTTCTCTGACATCCTGGAGCTGCCCAACGTCAGAGAGcTGGAGTCCGGGCCTCACGCTCCAGTTTATCAGCTGCTCAATCTCTTCGCCTATGGGACGTACAGCGACTATAAAGAACGCAGCCACTCTCCCGGAGCTCACTCCAGCCCAGAAGAACAAACTCAGACATCTtgtctgcCTTACTCGctcctcctgcagcagctggagcTCAGGAACGTGCGTGAGCTGGAGGACTTGCTCATCGAGGCCGTGTACAGCGACACCATCCAGGGCAAACTGGACCAGAGGAACCAGCAGGTGGAGGTGGACTGCAGCGTGGGCCGGGACCTGGGCCGTGCAGAGCTGCCTCACATTGCACAGACCCTGCAGGAGTGGTGCTCAGGCTGTGAGGCGGTGCTCTGTGGCATTGAAGAGCAGGTCACCAGAGCTAACCAGTACAGAGAGAGCCAGCTCAAAGTGAAAGTGCAAGTGGAGACAGAGGACCCAGATCAGCCCACTGGGGAGCCACGAGACCCTGCCTCCTCACAGGAGCCACGGCAGCCGGGCAAGAAGAGTTCAAAGGTCAAAGGTCTTCGTGGAAGTGGCAAGATCTGGTCGAAATCGAACTGA

Function

NR:

description
PREDICTED: COP9 signalosome complex subunit 7b-like, partial

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K12180 COPS7, CSN7; COP9 signalosome complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004657 True 711 mRNA 0.60 7 55994697 56001754

Neighbor

gene id symbol gene type direction distance location
AMCG00004658 tpi1 coding upstream 4877 55983450 ~ 55989820 (+)
AMCG00004651 NA coding upstream 137578 55851646 ~ 55857119 (+)
AMCG00004647 NA coding upstream 266298 55728040 ~ 55728399 (+)
AMCG00004646 NA coding upstream 293080 55701021 ~ 55701617 (+)
AMCG00004645 NA coding upstream 313054 55671958 ~ 55681643 (+)
AMCG00004655 NA coding downstream 14458 56016212 ~ 56035949 (+)
AMCG00004659 NA coding downstream 38121 56039875 ~ 56059971 (+)
AMCG00004656 NA coding downstream 64709 56066463 ~ 56083385 (+)
AMCG00004661 NA coding downstream 84032 56085786 ~ 56090395 (+)
AMCG00004667 NA coding downstream 116510 56118264 ~ 56130376 (+)
G9752 NA non-coding upstream 77488 55910752 ~ 55917209 (+)
G9749 NA non-coding upstream 98174 55895668 ~ 55896523 (+)
G9723 NA non-coding upstream 136300 55810383 ~ 55858397 (+)
G9721 NA non-coding upstream 205640 55788809 ~ 55789057 (+)
G9718 NA non-coding upstream 214276 55776788 ~ 55780421 (+)
G9814 NA non-coding downstream 108603 56110357 ~ 56111372 (+)
G9841 NA non-coding downstream 367276 56369030 ~ 56423357 (+)
G9852 NA non-coding downstream 422516 56424270 ~ 56428081 (+)
G9842 NA non-coding downstream 435008 56436762 ~ 56450932 (+)
G9863 chd4,LOC107587864,LOC107671917,LOC107724784 non-coding downstream 451620 56453374 ~ 56454282 (+)
AMCG00004650 NA other upstream 193429 55758271 ~ 55801268 (+)
AMCG00004642 NA other upstream 381656 55607539 ~ 55613041 (+)
AMCG00004644 NA other upstream 389212 55568132 ~ 55605485 (+)
AMCG00004634 NA other upstream 535293 55376095 ~ 55459404 (+)
AMCG00004632 NA other upstream 632988 55295175 ~ 55361709 (+)
AMCG00004673 NA other downstream 313858 56315612 ~ 56359797 (+)
AMCG00004681 NA other downstream 488339 56490093 ~ 56499584 (+)
G9889 NA other downstream 536500 56538254 ~ 56542063 (+)
AMCG00004702 NA other downstream 662386 56664140 ~ 56896215 (+)
AMCG00004695 gapdh,LOC107596669 other downstream 784098 56785852 ~ 56801892 (+)

Expression


Co-expression Network