AMCG00004661


Basic Information

Item Value
gene id AMCG00004661
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56085786 ~ 56090395 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004661
CAAAAGTAgcgtgttgttgtttgtgtactCATGATAGAAGAGAGGGATAGGGAGAACacgacacagaaagaaagaaagaaagaaagaaagaaagaaaAGGGTAACACACTCGTCTGAGAACACGAAGAACAGAAGTCGGAAAGAACGGAGAGAACTTATCGAAGATCTGTCCACAGAGCCGCACAGACTCTCACTGTTACCATAAAGGTATAAGGTTGAAATTCAGAGGTTACAACATGGGTGCCAGAGAGAGCAAGTGTGCTGTTGAGACCCCCAAAGCAGAGTCCAGGTGCCAGCCAATCAGCAATAAGCATCTCCACACCGCAATGGACCCGAGATCCCCCACTGATGGCATCAACAGAACACCTATACAGGTGAACGATGTCAAAGGCCAGAGGGTGGGGCTGGCTGAGACCCTGGGCCTGGAAGACGACCCCCGCTCCCCCACGCTTGGTGTCTCCCGCACCCCCATGAAGGATATCACGGCAGgcACGGTGACGTCCTTTGTTCGCCGACTGAATGAGCTCTTTGTCGATGACGGAGAGGAGGATGTGAAGAAGCAGGAGGGGGAGGAAACGGGGGCGCACAGTGAATCCAAGCCCCTCCCCTCTGCCTCGGTGTCTGACCTTGGTTTTGAGCCCAGTGTCTACGGCCAGAGTGACCCCTCTGTGACGCTTGCCCTGCTACCTCCAGCCTCCGAACAGAACGCCCTCCCTCCCCAGCCCCACACCTCTACGACTGAGCAGCAGAGCGAGGGCTCTGACCCTATCTCGCAGGCTGACTCTCTCCTGGCCGCTTCAGGTGGGGCTGGGCTAGTTGAAGCCCCTCACAATACACCTAGGATCAGAGAGGCGGACACCGTTGCCACAGCCAGCACCTCCGCAGAGCTCGGGGGGATGAGTGAGACCGCTGAGGACTCCGTAAGCTGGCCCGCAGTGGTGCAATATGACACTATCTCTGACTCCACCCAAATTCACCAGCTGCCCTTGCCTGCATCCCAAACCTGTGACCTGGGGTTGAGTGACTGCCCcacaacacccccccacactgcCCCCTGTGGTGAGTCCCTTGAGGTTGAGGTGGCCTCCCTTCTTACAAATGAGGGCAGTACTTCCCAATCAGGGCCCATCTCTCCAGCCTGCCCAGACCCCCAAGCTCCTGCCTCCAGTGGGTCCCCGGTCCAGACTGCCTCCAGCAGCCCAGTTCTGAAGAGAAGCCAAACCGCAGCAGACCCCCAGACTGTCGTGTCCCCCTTTCTTCAGCCTCAGTGGCTCCGATCAGGCCTGGAGTGGGGCGTCCCAGGGAGAGGCCGGGGGGGCAAGCAGgccgcccccaccccctccctcagTGGGGAGTGTCCCACCCCCGAGAGGAGAGTGAGCAGCCGGGCCGGTGCAAGGCCTGCTGGGAGTCGCGTCAAGGGCCAGAGCGCCCCAGGAAAGAAAGagagGTGTAGTAAGGTCCTGCTCAAAGAGGGTCGCTCTCCACTGCAGATCCTGAAGGAGACAAACTCCCCCCGAGAccgacagatggacagacaccTAGTGaTTAAGAAGCAGCTCCCCCTCTTGGCAGCTCTGGACAGACAGGCTGACAGACACAGCCAGGCCGGGACCGTGGGCAAGGAGAACCACCTCAGATGAACATCCAGAtggacagagaggaggagggaggggggtctCTCACACTAAATATTACACCCCAGTCTTTTTTAAAcccctttctctcactctctctgtgttttggaATCTCTATTcatcattttttctttccttagtctGTCAGCCTCTCTGTGTGTTAAAGCTGTGCTGTACATATGTCTACTATATGTGTATGGGTACAGTTGTCAAAGGGCTGTATTTATGGGTTGTGTTACCAAAGCACTTAAATTGTATTCTACGATAAtaacacattctctctctctctctttctgtttgaaTCTctatttaatgtgttgtttctCTGTCACTGTCAATCTCTTTGAATCTTTTTCAAATAGAttctctgtctccctttctTTGTCTAGCTGTGTTTCCTAATGAGTGACTGTCTATTTGAGTGTGATTATCTTCTCTCTGCGTTATTGATTTGaaattgtgaataaaatattttatttgatttta

Function

GO:

id name namespace
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004661 True 2123 mRNA 0.54 7 56085786 56090395

Neighbor

gene id symbol gene type direction distance location
AMCG00004656 NA coding upstream 2401 56066463 ~ 56083385 (+)
AMCG00004659 NA coding upstream 25815 56039875 ~ 56059971 (+)
AMCG00004655 NA coding upstream 49837 56016212 ~ 56035949 (+)
AMCG00004657 LOC104943838 coding upstream 84032 55994697 ~ 56001754 (+)
AMCG00004658 tpi1 coding upstream 95966 55983450 ~ 55989820 (+)
AMCG00004667 NA coding downstream 27869 56118264 ~ 56130376 (+)
AMCG00004669 NA coding downstream 42166 56132561 ~ 56145764 (+)
AMCG00004666 NA coding downstream 83636 56174031 ~ 56177843 (+)
AMCG00004670 NA coding downstream 94029 56184424 ~ 56185282 (+)
AMCG00004668 NA coding downstream 137403 56227798 ~ 56229714 (+)
G9752 NA non-coding upstream 168577 55910752 ~ 55917209 (+)
G9749 NA non-coding upstream 189263 55895668 ~ 55896523 (+)
G9723 NA non-coding upstream 227389 55810383 ~ 55858397 (+)
G9721 NA non-coding upstream 296729 55788809 ~ 55789057 (+)
G9718 NA non-coding upstream 305365 55776788 ~ 55780421 (+)
G9814 NA non-coding downstream 19962 56110357 ~ 56111372 (+)
G9841 NA non-coding downstream 278635 56369030 ~ 56423357 (+)
G9852 NA non-coding downstream 333875 56424270 ~ 56428081 (+)
G9842 NA non-coding downstream 346367 56436762 ~ 56450932 (+)
G9863 chd4,LOC107587864,LOC107671917,LOC107724784 non-coding downstream 362979 56453374 ~ 56454282 (+)
AMCG00004650 NA other upstream 284518 55758271 ~ 55801268 (+)
AMCG00004642 NA other upstream 472745 55607539 ~ 55613041 (+)
AMCG00004644 NA other upstream 480301 55568132 ~ 55605485 (+)
AMCG00004634 NA other upstream 626382 55376095 ~ 55459404 (+)
AMCG00004632 NA other upstream 724077 55295175 ~ 55361709 (+)
AMCG00004673 NA other downstream 225217 56315612 ~ 56359797 (+)
AMCG00004681 NA other downstream 399698 56490093 ~ 56499584 (+)
G9889 NA other downstream 447859 56538254 ~ 56542063 (+)
AMCG00004702 NA other downstream 573745 56664140 ~ 56896215 (+)
AMCG00004695 gapdh,LOC107596669 other downstream 695457 56785852 ~ 56801892 (+)

Expression


Co-expression Network