AMCG00004695 (gapdh,LOC107596669)


Basic Information

Item Value
gene id AMCG00004695
gene name gapdh,LOC107596669
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56785852 ~ 56801892 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004695
ATGGTGAAGATTGGCATCAATGGATTTGGCCGTATCGGGCGTCTGGTGACCCGTGCTGCAGTGAGTTCTGGGAAGGTGGAGGTGGTGGCCATTAATGACCCCTTCATTGACCTGGAGTACATGGTGTACATGTTCAAGTATGACTCCACGCACGGCCGCTTCAAAGGGGACGTGAAGGCCGAGGGGGGCAAGCTGGTGATCAACGGCAAGGTGGTGCAGGTCTTCCAggaGCGGGATCCGACCCAGATCAAGTGGGGCACTGCGGGGGCAGACTATGTGGTCGAGTCCACCGGTGTCTTCACCACCATCGAGAAGGCCTCGGCTCATCTGAAGGGCGGGGCCAAGCGTGTCATCATCTCGGCCCCCAGTGCTGACGCCCCCATGTTCGTAGTGGGTGTCAATCACGAGAAGTACAGCAACTCCCTGAAGGTGGTCAGgTGGAAGGTGCGCTCCTCCTCCAGAGACAGGCTGTATGTGTGTCTCatcatgtctctgtgttttggtGTCCCCACTCTCCTCATCATCGGCTCCTACATCGCCATACTGCTACAGATCTGGCCATCGCTGTGTATCTCTCCTTCACAG
>TU12347
TCTGCATCGTTCACTGCCTTCCGTGTGGAGCCACGCCCCCTCCGGACCGTGACCCTCTGCCAGCCAATAGCAGACGCGCTCTCCCCGAGGCACCGCCCTCCGCCGGCGTCGCCGCTCTACCGCTAGTCCAGGGGGGCTTTCCTGGCAGGACACAGGAGAGGACGCGTCTGTGCGCCTGCGCTGCCGCTGCGGGTATTACGTCAGCAGCCGTCCCCGGTGACCTTCACTCCCAGAGCGGGGAGCGCCGGGGGCGTGGCCGACCGGGGGCGTGGCCTGTGGGGCGCGGGTATAAAAGCGCACCGCCCCTGCTGTCTACACTCGCACAGGAGCGGAGACCCGGAAGGACGCGCAGTCTCACACGCAGAGGACTTGAGCACTAATTGGGAGCCATGGTGAAGATTGGCATCAATGGATTTGGCCGTATCGGGCGTCTGGTGACCCGTGCTGCAGTGAGTTCTGGGAAGGTGGAGGTGGTGGCCATTAATGACCCCTTCATTGACCTGGAGTACATGGTGTACATGTTCAAGTATGACTCCACGCACGGCCGCTTCAAAGGGGACGTGAAGGCCGAGGGGGGCAAGCTGGTGATCAACGGCAAGGTGGTGCAGGTCTTCCAggaGCGGGATCCGACCCAGATCAAGTGGGGCACTGCGGGGGCAGACTATGTGGTCGAGTCCACCGGTGTCTTCACCACCATCGAGAAGGCCTCGGCTCATCTGAAGGGCGGGGCCAAGCGTGTCATCATCTCGGCCCCCAGTGCTGACGCCCCCATGTTCGTAGTGGGTGTCAATCACGAGAAGTACAGCAACTCCCTGAAGGTGGTCAGGTAAGCGGCCCCACCGCCTCTGAGCAGTACAGCGCCGTGCCGCAGGTCCTCCACAATGCAGACCTAGTTAAACCTCCAGAACTCTTCCTCCCACATAGATGGGAATTATTTAgtataatagttttttttcaaattttaaaatcagtgaatttcaaaagaaCCAAGAACAAAAACCAGTGATCAAGTGTTTCAGGACAATCGGTGCATAACTAAATCCTATCAActtcaaaaacaatatgatGTATTATGTTgcaagtcatcctggataaaggcatctgccaagaaatgaaaaataatagtgATTAACAGATTTAGTTTTGAATTGTCCAATTCATTAAAGGTGTTCCCAACAAAATGGTCTAATGCATtcctttttcttaaaaatggCCAATGCATCAGAACTTAAAAATAACCATCCTTTCAACAAATGGGGGGGGGAAACTCAGTGCTTTTAAAAGCAgggacaatttatttttatattttgttcagttaaaaacaaatactttaacAATCAATCCTGCAGAGGAGGCAGTCACAGTCCTGGTGGAGATGTCTATGCTTCACTCTGGACCGGCTCCGTCTCTGCCGTACTGGCTCCTCTCTGCAGGCTGTGGCCCCTCCGTCGCTGGTGCCCTCACGGTGTGTGGATGTTCTTCTGGTGCCTCGGTGTCCTCGCAGACCTGCAGCGATCAAGAGAGACTGTGCTAGTCTGGTGCACATGGGAAGCTTCACTTGACAGTCTGTGCTACCGAGACCAGTGTGTCAGGTCGGGCTCGGGAGAGGAGCGGCCCTGGGGGGACCCATGGACCCCCGGACCAAACGTGTTAAAAGGAAGAGTGCCTCTCTCCCGCCCACCCTccctattattaataataaatatatatatatattttttttttaatataaagtggTCAATCACGTTGCATTTTAAGTAGtgcttattttgcatttcattcacttGTAAGTACCTGCTGTTTGATCTGCTATCCCAGTAATGGGAGGGATGCAATCCATTCCCCATAGAGGCAGGTTTGAAATGGAGAGGTGTTTTAAGACCAGATGGTACTGGATAAAGTGAAGTTGGAAATGTATTGTCTAAACGCAGGGTGTGGGACACAAGGAAATCCACAGTTGATGCTCAAATCGGCACACGGTGAAAGGCCTGCAGTGCTGTTCCTGCCAGCCTGAACTAACGCCAAAACTCTGTCCTGGGGACAATCGTACATAAAACGTTGGCCTTGGAAGAGAAGACTTGTAACGTGCCTGTGGACCTGACCTgacctgccctgccctgccccgcGCACTGAACGATAACCTGTTAACGCATGCACACTGATTGCCTGCTGGTCCAGTGGGCAACTGCGGTGTTGGTGTGCTGAACGCCGGCTGCTGCTCGTTGTTGGATTCCTGGCATCACTAAAGCCCCTCGTATTGTGAGCATCGTTAATGCCTGTGCCACTCATTCAGTAGACACGAGACCGACTATCATGactgcataataaaactgtccaTAAGCTGCTTATTTTAGAAGCCAAGCTGAGGAGGGGGGGAAAGCTACTTGTTTTaagctttttatatttaaaggtGAATTTACAGTAATGCCATCcaagtgtgtgtgcatctgtagTTCATGTCACTGAATTTTAAAAGGGTCCGCTTGATTCTCGCACTGACTTGTCCCGGCCAATGTGGATGGCCATGTTCACTTCCATGGGAATGGAGACCATGATGGTGCGTAAGctttttatacagtttataacTTCTAATACTTGGTTTCATTGCATGACTCATTTCTGATCCTAATTGCTGCNNN
>TU12349
gggggagagagcgggagagTCACACAcatagcagagagagagagagagaggcagagataCACAGCGACAGACAGAGGGGGACAAAGGGCCAGAGatggacaaagagagagaaagcggGAGAtatcgagagagagagcagagaagaAGACTGAAAAGGAGCCATGACAGAAAGATGAGTCCAGGGGGGCTTTCCTGGCAGGACACAGGAGAGGACGCGTCTGTGCGCCTGCGCTGCCGCTGCGGGTATTACGTCAGCAGCCGTCCCCGGTGACCTTCACTCCCAGAGCGGGGAGCGCCGGGGGCGTGGCCGACCGGGGGCGTGGCCTGTGGGGCGCGGGTATAAAAGCGCACCGCCCCTGCTGTCTACACTCGCACAGGAGCGGAGACCCGGAAGGACGCGCAGTCTCACACGCAGAGGACTTGAGCACTAATTGGGAGCCATGGTGAAGATTGGCATCAATGGATTTGGCCGTATCGGGCGTCTGGTGACCCGTGCTGCAGTGAGTTCTGGGAAGGTGGAGGTGGTGGCCATTAATGACCCCTTCATTGACCTGGAGTACATGGTGTACATGTTCAAGTATGACTCCACGCACGGCCGCTTCAAAGGGGACGTGAAGGCCGAGGGGGGCAAGCTGGTGATCAACGGCAAGGTGGTGCAGGTCTTCCAggaGCGGGATCCGACCCAGATCAAGTGGGGCACTGCGGGGGCAGACTATGTGGTCGAGTCCACCGGTGTCTTCACCACCATCGAGAAGGCCTCGGCTCATCTGAAGGGCGGGGCCAAGCGTGTCATCATCTCGGCCCCCAGTGCTGACGCCCCCATGTTCGTAGTGGGTGTCAATCACGAGAAGTACAGCAACTCCCTGAAGGTGGTCAGCAGTGCATCC

Function

symbol description
gapdh Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; microtubule binding activity; and peptidyl-cysteine S-nitrosylase activity. Predicted to be involved in several processes, including glycolytic process; peptidyl-cysteine S-trans-nitrosylation; and protein stabilization. Predicted to act upstream of or within apoptotic process and glucose metabolic process. Predicted to be located in cytoplasm; microtubule cytoskeleton; and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; integument; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDH (glyceraldehyde-3-phosphate dehydrogenase).

NR:

description
PREDICTED: glyceraldehyde-3-phosphate dehydrogenase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0050661 NADP binding molecular_function
GO:0051287 NAD binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004695 False 585 mRNA 0.57 7 56789623 56801892
TU12347 True 2639 TUCP 0.43 7 56788634 56793965
TU12349 False 887 TUCP 0.50 8 56785852 56800654

Neighbor

gene id symbol gene type direction distance location
AMCG00004687 NA coding upstream 7426 56775205 ~ 56778426 (+)
AMCG00004688 NA coding upstream 56019 56724853 ~ 56729833 (+)
AMCG00004686 NA coding upstream 65777 56712353 ~ 56720075 (+)
AMCG00004683 NA coding upstream 142570 56634846 ~ 56643282 (+)
AMCG00004680 NA coding upstream 250589 56528156 ~ 56535263 (+)
AMCG00004694 NA coding downstream 12522 56814414 ~ 56820789 (+)
AMCG00004696 NA coding downstream 39224 56841116 ~ 56843730 (+)
AMCG00004703 NA coding downstream 76513 56878405 ~ 56886798 (+)
AMCG00004701 LOC103393816,LOC101468857,LOC106519603 coding downstream 113430 56915322 ~ 56926198 (+)
G9932 NA non-coding upstream 12134 56765053 ~ 56773718 (+)
G9930 NA non-coding upstream 26606 56758684 ~ 56759246 (+)
G9923 NA non-coding upstream 50464 56733305 ~ 56735388 (+)
G9914 NA non-coding upstream 64171 56680396 ~ 56721681 (+)
G9904 NA non-coding upstream 91129 56615485 ~ 56694723 (+)
G9941 NA non-coding downstream 44162 56846054 ~ 56899913 (+)
G9957 NA non-coding downstream 47480 56849372 ~ 56852139 (+)
G9958 NA non-coding downstream 51049 56852941 ~ 56853851 (+)
G9942 NA non-coding downstream 106284 56908176 ~ 56954608 (+)
G9978 NA non-coding downstream 157342 56959234 ~ 56959738 (+)
G9889 NA other upstream 243789 56538254 ~ 56542063 (+)
AMCG00004681 NA other upstream 286268 56490093 ~ 56499584 (+)
AMCG00004673 NA other upstream 426055 56315612 ~ 56359797 (+)
AMCG00004650 NA other upstream 984584 55758271 ~ 55801268 (+)
AMCG00004642 NA other upstream 1172811 55607539 ~ 55613041 (+)
AMCG00004700 NA other downstream 59462 56861354 ~ 56867131 (+)
AMCG00004707 NA other downstream 159621 56961513 ~ 57002024 (+)
G9982 NA other downstream 185014 56986906 ~ 56987644 (+)

Expression


Co-expression Network