AMCG00004686


Basic Information

Item Value
gene id AMCG00004686
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56712353 ~ 56720075 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004686
GCAGCGCGGCGTCACCAGTTCCTGCTCTGAATACGGGAAGTGCGCCGCCCAGCTGGCAGCGCGGACGCAGATGTAAACACCGGCCATTGCCAGCGAGGCCCCGGTCACCGCGCACCGAAGCGCCGCCGCGCTCATCTGCTAGACCGGCACTCgctcttttttatgtttgtgctTAAACAGACCAACACgaagtgaaaaaacaacaactaaacaagACAGACGACAGCGGAAACGACTTCTCCTCCCTCGGCCTCGGACGGACGGAGGGATCGCGGGGGGCGGCCCTTTCTCTGTGACCGCGGCGCGGCGCGCAGtctctgTTCTGAGGGTCCATGCTGGTAGCCTGGGCCATCCCTGTGGAGTgagagacaggcagagggaTGGACAGGCAGCTCAAGAGGAGGAGTGGTCTGGAGATGAGGAGGACGAGTGCAGCAGTGCTGCTTATTCTGCTGTGTTCCTCTGCCCTGAGTGGAGGTGCTGCAGTGGGAGCCCCCAACCACAGCAACCAGTCCATGTCCTGCAGTGAGGAGGAGTTCCCTCATGATGGATACTGCTGCAATAAATGCCTCCCAGGGTTTAAGATGGTGAAGAGCTGCGACAGGCCTAGGCACAGGACGCAGTGTCAGCCCTGCGCAGAGGGAACCTACCTGGCTCTGCCCAATTACAGCACGACCTGTTATAAGTGCCGCAAGTGTGACACagACGAGACAGAGCTGTCTCCGTGCAGTTCCAACAAGAACCGGGTGTGTGGGTGCCTGCACGATCACTACAGGACGGAGATTGCCTTTAAGGAGTTCGAGTGCCGGCCCTGCCGCGTCTGTCCCAAGGGCTTCATCCAGACGCAGGCCTGTTCTCTTGACAATGACACCCAGTGTGCATGTGGTCCCAGTTTCTACCAGGAAGGAACTACGGGAGACTGTCTGCTGTGTACCAAGTGCAATTCCTATAAGGAGTGCAGCCACTTGTGCAGAACGACACCTGATGTGACTGAATTACACAAACCTGCGCCTGACAATACAGgctcTCAGATGCTCACTGTGTATGTGCTCTCCACCTTCCTGGTCCTGCTGATGGGGATACTGTTGCTGTCGACCCCCCCATCCTCTCCATCGCCCGGCCTGTCAGACTGTGAGCTCCCTCTCTACCCAATGATGGCTCAGACCGCCATCCCCACCCACAGCCAGCTGCCAGACTGTGTCCCCCGATCCACTACTCtctcccagttcctgtaCGCCCTGATCGACCAGGTGCCGGCGCTGCGCTGGAAGGAGCTGGTGCGGCGGCTGGGTGTGGACGAGCGCGAGATCGAGCGGGCGGAGCGGGACCAGCGCTCGTTCGTGGATGCACAGTATTGCATGGTGCGGGCCTGGAGCGAGGGCGGCGGGGGCCGGGAGTGGGCGTCGGCCTCACTGGCACTGCCCCGCTCGCTGGCCACCACGCTCCTCCGCACACTGAGGGATatggggctggggggggcggCTGAACGTCTAGCGGAACAGTACGGTATCAGGGAggtgtga

Function

GO: NA

KEGG:

id description
K03158 TNFRSF1A, TNFR1, CD120a; tumor necrosis factor receptor superfamily member 1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004686 True 1523 mRNA 0.61 10 56712353 56720075

Neighbor

gene id symbol gene type direction distance location
AMCG00004683 NA coding upstream 69071 56634846 ~ 56643282 (+)
AMCG00004680 NA coding upstream 177090 56528156 ~ 56535263 (+)
AMCG00004679 NA coding upstream 188716 56512067 ~ 56523637 (+)
AMCG00004668 NA coding upstream 482639 56227798 ~ 56229714 (+)
AMCG00004670 NA coding upstream 527071 56184424 ~ 56185282 (+)
AMCG00004688 NA coding downstream 4778 56724853 ~ 56729833 (+)
AMCG00004687 NA coding downstream 55130 56775205 ~ 56778426 (+)
AMCG00004694 NA coding downstream 94339 56814414 ~ 56820789 (+)
AMCG00004696 NA coding downstream 121041 56841116 ~ 56843730 (+)
AMCG00004703 NA coding downstream 158330 56878405 ~ 56886798 (+)
G9904 NA non-coding upstream 17630 56615485 ~ 56694723 (+)
G9919 NA non-coding upstream 19834 56690719 ~ 56692519 (+)
G9915 NA non-coding upstream 27615 56683025 ~ 56684738 (+)
G9908 NA non-coding upstream 54081 56657860 ~ 56658272 (+)
G9903 NA non-coding upstream 97895 56614032 ~ 56614458 (+)
G9923 NA non-coding downstream 13230 56733305 ~ 56735388 (+)
G9930 NA non-coding downstream 38609 56758684 ~ 56759246 (+)
G9932 NA non-coding downstream 44978 56765053 ~ 56773718 (+)
G9941 NA non-coding downstream 125979 56846054 ~ 56899913 (+)
G9957 NA non-coding downstream 129297 56849372 ~ 56852139 (+)
G9889 NA other upstream 170290 56538254 ~ 56542063 (+)
AMCG00004681 NA other upstream 212769 56490093 ~ 56499584 (+)
AMCG00004673 NA other upstream 352556 56315612 ~ 56359797 (+)
AMCG00004650 NA other upstream 911085 55758271 ~ 55801268 (+)
AMCG00004642 NA other upstream 1099312 55607539 ~ 55613041 (+)
AMCG00004695 gapdh,LOC107596669 other downstream 65777 56785852 ~ 56801892 (+)
AMCG00004700 NA other downstream 141279 56861354 ~ 56867131 (+)
AMCG00004707 NA other downstream 241438 56961513 ~ 57002024 (+)
G9982 NA other downstream 266831 56986906 ~ 56987644 (+)

Expression


Co-expression Network