G9915


Basic Information

Item Value
gene id G9915
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56683025 ~ 56684738 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU12316
tttatatagttttttttaagacagAAAACCGACAGGCTCCATTTTGTGAGGTTTTACGGTAAGTCGAGGTGAGTTTAAGACCGAAAGGGACGCTGGGATATATCACAAAATGGCGGCCCCCATGTTTGGAGTACAGTGTCATTGATgtttgtcgttttgttttttgtattacgCGTATTAACGTATGCGGTTTTCGGCAACAACGTCACGAATAAATACCGCATTGTCTCCGTTTTCGAGTGATACTCTTAATTATAGGTTTTATCACATTGATTGTAGTTATCGTTTGAAAAATCGCGTCTAGTGTGACAAGTTCGTGTTGAAAGAAGCAGAATGTCAGTGTTgctgggcagtgtgtggagagCCGGTGTGTCTCTGTTTAAACCCACActgcagacaggcaggcagataAGCacaggtgagtgtgtgtgagtctctgtGACTGTCTTACTCTCATTTTTTCAGTgtgtcttcctgtctctctaTCCCTGCCCTGGTGACTCTCTTGTACAGCATCCTGTGAGATCCTGATGAGAACCCATAGGAGCCTGCATCAGGTCCTGTTTCCTGCGTCTCATCTGCGACCCTGTGGAATCTTGGTGAAACCGTGGTGCGAGTCGAGTGTTGCTTCCCCAGGTTTATCAAGGGCTTTGTCATGTGAAACGTGACAAACTGGAGTCCACACAAAATACTTTGTCtgaaaggaaatataaatatgctgAAAATGCCATGAAGTCCTCCTGGTCTTTGACCTTTTAGTGATTTTGTGCCAGGCATATTTTGAGCTGTTAATGAACTCTGTCAAATTCAGGGCTTCCGGGCTCGTGTGTTATTAGTGCCGGCCCAGTGACTGTGTGGAAAATCCACTGCCCCTCTTCACTGGATAGCACACCGCTCATCTCAGCCCTGTTCATGAACTGGGCACCCTCATTTATTAACCTTTGCAGATTGTAGGATGAATAATGTGAACTCTGCCCAACCTCTGGGCAAATTGTAGGGAAGAGaacaccctctccctctctctctctctctctctctctctctgtgtctctccctccctccttcccctccctctttgtctccatccctctgtctttccctgtctcttcctctctgtcactccctccttctcctccctttccctccatctctctctctcttcctctctgtgtctgtccctccctccctctgtctctctgtgtgggtATGGAGGTCATTTCTATTCTGATtattgaacataagaaagtttacaaacgagaggaggccattctccccatcgtgctcatttggtgtccattaataactaagtgatccaaggatcctatNN

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko05012 Parkinson disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU12316 True 1327 lncRNA 0.46 2 56683025 56684738

Neighbor

gene id symbol gene type direction distance location
AMCG00004683 NA coding upstream 39743 56634846 ~ 56643282 (+)
AMCG00004680 NA coding upstream 147762 56528156 ~ 56535263 (+)
AMCG00004679 NA coding upstream 159388 56512067 ~ 56523637 (+)
AMCG00004668 NA coding upstream 453311 56227798 ~ 56229714 (+)
AMCG00004670 NA coding upstream 497743 56184424 ~ 56185282 (+)
AMCG00004686 NA coding downstream 27615 56712353 ~ 56720075 (+)
AMCG00004688 NA coding downstream 40115 56724853 ~ 56729833 (+)
AMCG00004687 NA coding downstream 90467 56775205 ~ 56778426 (+)
AMCG00004694 NA coding downstream 129676 56814414 ~ 56820789 (+)
AMCG00004696 NA coding downstream 156378 56841116 ~ 56843730 (+)
G9908 NA non-coding upstream 24753 56657860 ~ 56658272 (+)
G9903 NA non-coding upstream 68567 56614032 ~ 56614458 (+)
G9863 chd4,LOC107587864,LOC107671917,LOC107724784 non-coding upstream 228743 56453374 ~ 56454282 (+)
G9842 NA non-coding upstream 232093 56436762 ~ 56450932 (+)
G9852 NA non-coding upstream 254944 56424270 ~ 56428081 (+)
G9919 NA non-coding downstream 5981 56690719 ~ 56692519 (+)
G9923 NA non-coding downstream 48567 56733305 ~ 56735388 (+)
G9930 NA non-coding downstream 73946 56758684 ~ 56759246 (+)
G9932 NA non-coding downstream 80315 56765053 ~ 56773718 (+)
G9941 NA non-coding downstream 161316 56846054 ~ 56899913 (+)
G9889 NA other upstream 140962 56538254 ~ 56542063 (+)
AMCG00004681 NA other upstream 183441 56490093 ~ 56499584 (+)
AMCG00004673 NA other upstream 323228 56315612 ~ 56359797 (+)
AMCG00004650 NA other upstream 881757 55758271 ~ 55801268 (+)
AMCG00004642 NA other upstream 1069984 55607539 ~ 55613041 (+)
AMCG00004695 gapdh,LOC107596669 other downstream 101114 56785852 ~ 56801892 (+)
AMCG00004700 NA other downstream 176616 56861354 ~ 56867131 (+)
AMCG00004707 NA other downstream 276775 56961513 ~ 57002024 (+)
G9982 NA other downstream 302168 56986906 ~ 56987644 (+)

Expression


Co-expression Network