G9863 (chd4,LOC107587864,LOC107671917,LOC107724784)


Basic Information

Item Value
gene id G9863
gene name chd4,LOC107587864,LOC107671917,LOC107724784
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56453374 ~ 56454282 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU12239
CATAGAGGGACAGCCCTAGAGCTGGACTCGTACCTTGAACCTCCTGGCCAGGAACTTGTTCTTGATCTCCAGGAAGTTGCCGCGGTTAATCTCACCCTTGAAGGGCTCATTCAGGATGGCATACTTTGGGTCATTCTGGATGTCCTGCCAGCGCGCGTACCCGTGATTGATGATGCCGGCGAGGAGCCAGTAGTCATGGCGACGGTGCCAGATCTCATAGGTCTTCTTGGTAACAGTTGCTGCCCTCTCCTCATTCTGCCACAGAGAGTGGAGCTCTGTGAATCCTCCATCTGCGATGTTGAACATGAACCTCTGCTTCACtgctttcttcctctcctctgtGACCTCTTTCACACTCTCTCCATTCTGTAGCTTGACCTCGGCAGCCTTCACTCCCTCCTCCACTGCTGCCACCACTGCCTTGCCCTCCTTCTCATCCTTTTGttctgagacagagagagagaaaagggggtTAATACACAGACTGC

Function

symbol description
chd4 Enables RNA polymerase II-specific DNA-binding transcription factor binding activity; histone deacetylase binding activity; and transcription coregulator binding activity. Contributes to nucleosomal DNA binding activity. Involved in chromatin remodeling. Located in centrosome; cytoplasm; and nucleoplasm. Part of NuRD complex and RNA polymerase II transcription regulator complex.

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12239 True 488 lncRNA 0.53 3 56453374 56454282

Neighbor

gene id symbol gene type direction distance location
AMCG00004668 NA coding upstream 223660 56227798 ~ 56229714 (+)
AMCG00004670 NA coding upstream 268092 56184424 ~ 56185282 (+)
AMCG00004666 NA coding upstream 275531 56174031 ~ 56177843 (+)
AMCG00004669 NA coding upstream 307610 56132561 ~ 56145764 (+)
AMCG00004667 NA coding upstream 322998 56118264 ~ 56130376 (+)
AMCG00004679 NA coding downstream 57785 56512067 ~ 56523637 (+)
AMCG00004680 NA coding downstream 73874 56528156 ~ 56535263 (+)
AMCG00004683 NA coding downstream 180564 56634846 ~ 56643282 (+)
AMCG00004686 NA coding downstream 258071 56712353 ~ 56720075 (+)
AMCG00004688 NA coding downstream 270571 56724853 ~ 56729833 (+)
G9842 NA non-coding upstream 2442 56436762 ~ 56450932 (+)
G9852 NA non-coding upstream 25293 56424270 ~ 56428081 (+)
G9841 NA non-coding upstream 30017 56369030 ~ 56423357 (+)
G9814 NA non-coding upstream 342002 56110357 ~ 56111372 (+)
G9752 NA non-coding upstream 536165 55910752 ~ 55917209 (+)
G9903 NA non-coding downstream 159750 56614032 ~ 56614458 (+)
G9904 NA non-coding downstream 161203 56615485 ~ 56694723 (+)
G9908 NA non-coding downstream 203578 56657860 ~ 56658272 (+)
G9914 NA non-coding downstream 226114 56680396 ~ 56721681 (+)
G9915 NA non-coding downstream 228743 56683025 ~ 56684738 (+)
AMCG00004673 NA other upstream 93577 56315612 ~ 56359797 (+)
AMCG00004650 NA other upstream 652106 55758271 ~ 55801268 (+)
AMCG00004642 NA other upstream 840333 55607539 ~ 55613041 (+)
AMCG00004644 NA other upstream 847889 55568132 ~ 55605485 (+)
AMCG00004634 NA other upstream 993970 55376095 ~ 55459404 (+)
AMCG00004681 NA other downstream 35811 56490093 ~ 56499584 (+)
G9889 NA other downstream 83972 56538254 ~ 56542063 (+)
AMCG00004702 NA other downstream 209858 56664140 ~ 56896215 (+)
AMCG00004695 gapdh,LOC107596669 other downstream 331570 56785852 ~ 56801892 (+)
AMCG00004700 NA other downstream 407072 56861354 ~ 56867131 (+)

Expression


Co-expression Network