G9904


Basic Information

Item Value
gene id G9904
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56615485 ~ 56694723 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU12287
ctacagccccctattgtaacagcactactctattgcactgttactacagacccctattgtaacagcactattctactgcactgttactacagccccctactgtaacagcactattctactgcactgttactacagacccctattgtaacagcactactctactgcactgttactacagccccctactgTAATGTTAGTATATCTGTCTCTTGTGTTATTGTACTGAagtgcagtgtgtctgtactaccacccctttctctctcacacatttaCTTTCTCTCTGTATCACTCCAGCTCCTCCTTCCACACACACGCTTCCTTACTCGCTCACTCTCTTACACACATCGTCCTgtgcactctcacacacactccctttCTGTCTCTTACACTctaacacactcactcactgtaTCACCCTCATTTTAGTCACCCGCTCTCTCTCCGttttcctcccctccctccctctctgatACATTCTCCTCTCAGTGCATCTTCACTCTTCCACTAAATATGTCAGTCTGTCTCTTGCTGTTCCTCCAAAACACACTTTTCTCTCATGATCTCTTGTGGTGTCTAGTGTCTGTGCCATTCTCCTGTTTGCATTTGGTGACCAGTTTTCAGCCCCATATACATAaactttatgtgtgtgtgtatatatagagagagacacacacatataaattaaaacgCATAACATTAAAGTACATTCATAATATCATATCTgacccacccctccccccacaaaaagaaaaacattctagaaaaaaaaatattattttgcaggGGTTTTTTAATCGTTTTGTTggctgtttgtttattgttgtagtCGTGGTTTTTGCCCCTCAACTTCCTGTTTCCCGTTTCCTACTTCCTGTTCCCGGAGCGAGACACGGCCTCATTTTGCGTGCGTGTGCGTTTTGTGTGCGTGGGCGTGCGTGTGCCACTTTTggagaaatgcaaaacattatcTTGTAAGATATCgaaaacaatagtaataaactcatgataataatgaatacaaatataattatttagaatattaaaaaagtaaaaaaaaagttgcattaagaagagagaagaattcattttaaaagcagtttcaAGGGAAAAGAATATTCACTACAATGGACATTAAAAGCCAGTTTTGTTGCTGCTATTGGACAGTTCTTTCGCTGTTTCGTTGACGCATGTAAACTATACTCGCCTTCAATAAACTCAATACGAGAAACTCGGGTGTCCGAGTCTTGCCTTGCCTCCAGTGCTGCCGGTGTTTGTCGCCGCCTGCGGGTGAGTGCAAGTACTGCAGCGGAGCCTGGCTGCTCCCAGTACACTGCTC
>TU12288
ctacagccccctattgtaacagcactactctattgcactgttactacagacccctattgtaacagcactattctactgcactgttactacagNNccctattgtaacagcactactctactgcactgttactacagccccctactgTAATGTTAGTATATCTGTCTCTTGTGTTATTGTACTGAagtgcagtgtgtctgtactaccacccctttctctctcacacatttaCTTTCTCTCTGTATCACTCCAGCTCCTCCTTCCACACACACGCTTCCTTACTCGCTCACTCTCTTACACACATCGTCCTgtgcactctcacacacactccctttCTGTCTCTTACACTctaacacactcactcactgtaTCACCCTCATTTTAGTCACCCGCTCTCTCTCCGttttcctcccctccctccctctctgatACATTCTCCTCTCAGTGCATCTTCACTCTTCCACTAAATATGTCAGTCTGTCTCTTGCTGTTCCTCCAAAACACACTTTTCTCTCATGATCTCTTGTGGTGTCTAGTGTCTGTGCCATTCTCCTGTTTGCATTTGGTGACCAGTTTTCAGCCCCATATACATAaactttatgtgtgtgtgtatatatagagagagacacacacatataaattaaaacgCATAACATTAAAGTACATTCATAATATCATATCTgacccacccctccccccacaaaaagaaaaacattctagaaaaaaaaatattattttgcaggGGTTTTTTAATCGTTTTGTTggctgtttgtttattgttgtagtCGTGGTTTTTGCCCCTCAACTTCCTGTTTCCCGTTTCCTACTTCCTGTTCCCGGAGCGAGACACGGCCTCATTTTGCGTGCGTGTGCGTTTTGTGTGCGTGGGCGTGCGTGTGCCACTTTTggagaaatgcaaaacattatcTTGTAAGATATCgaaaacaatagtaataaactcatgataataatgaatacaaatataattatttagaatattaaaaaagtaaaaaaaaagttgcattaagaagagagaagaattcattttaaaagcagtttcaAGGGAAAAGAATATTCACTACAATGGACATTAAAAGCCAGTTTTGTTGCTGCTATTGGACAGTTCTTTCGCTGTTTCGTTGACGCATGTAAACTATACTCGCCTTCAATAAACTCAATACGAGAAACTCGGGTGTCCGAGTCTTGCCTTGCCTCCAGTGCTGCCGGTGTTTGTCGCCGCCTGCGGGTGAGTGCAAGTACTGCAGCGGAGCCTGGCTGCTCCCAGTACACTGCTC
>TU12289
ctacagccccctattgtaacagcactactctactgcactgttactacagccccctattgtaacagcactattctactgcactgttactacagccccctattctaacagcactactctactgcactgttactacagccccctactgtaacagcactactctactgcactgttactacagacccccattgtaacagcactactctactgcactgttactacagccccctattgaaacagcactattctactgcactgttactacagNNccctattgtaacagcactactctactgcactgttactacagccccctactgTAATGTTAGTATATCTGTCTCTTGTGTTATTGTACTGAagtgcagtgtgtctgtactaccacccctttctctctcacacatttaCTTTCTCTCTGTATCACTCCAGCTCCTCCTTCCACACACACGCTTCCTTACTCGCTCACTCTCTTACACACATCGTCCTgtgcactctcacacacactccctttCTGTCTCTTACACTctaacacactcactcactgtaTCACCCTCATTTTAGTCACCCGCTCTCTCTCCGttttcctcccctccctccctctctgatACATTCTCCTCTCAGTGCATCTTCACTCTTCCACTAAATATGTCAGTCTGTCTCTTGCTGTTCCTCCAAAACACACTTTTCTCTCATGATCTCTTGTGGTGTCTAGTGTCTGTGCCATTCTCCTGTTTGCATTTGGTGACCAGTTTTCAGCCCCATATACATAaactttatgtgtgtgtgtatatatagagagagacacacacatataaattaaaacgCATAACATTAAAGTACATTCATAATATCATATCTgacccacccctccccccacaaaaagaaaaacattctagaaaaaaaaatattattttgcaggGGTTTTTTAATCGTTTTGTTggctgtttgtttattgttgtagtCGTGGTTTTTGCCCCTCAACTTCCTGTTTCCCGTTTCCTACTTCCTGTTCCCGGAGCGAGACACGGCCTCATTTTGCGTGCGTGTGCGTTTTGTGTGCGTGGGCGTGCGTGTGCCACTTTTggagaaatgcaaaacattatcTTGTAAGATATCgaaaacaatagtaataaactcatgataataatgaatacaaatataattatttagaatattaaaaaagtaaaaaaaaagttgcattaagaagagagaagaattcattttaaaagcagtttcaAGGGAAAAGAATATTCACTACAATGGACATTAAAAGCCAGTTTTGTTGCTGCTATTGGACAGTTCTTTCGCTGTTTCGTTGACGCATGTAAACTATACTCGCCTTCAATAAACTCAATACGAGAAACTCGGGTGTCCGAGTCTTGCCTTGCCTCCAGTGCTGCCGGTGTTTGTCGCCGCCTGCGGGTGAGTGCAAGTACTGCAGCGGAGCCTGGCTGCTCCCAGTACACTGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12287 False 1336 lncRNA 0.51 2 56615485 56694723
TU12288 False 1293 lncRNA 0.51 2 56615485 56694723
TU12289 True 1465 lncRNA 0.34 3 56615485 56694723

Neighbor

gene id symbol gene type direction distance location
AMCG00004680 NA coding upstream 80222 56528156 ~ 56535263 (+)
AMCG00004679 NA coding upstream 91848 56512067 ~ 56523637 (+)
AMCG00004668 NA coding upstream 385771 56227798 ~ 56229714 (+)
AMCG00004670 NA coding upstream 430203 56184424 ~ 56185282 (+)
AMCG00004666 NA coding upstream 437642 56174031 ~ 56177843 (+)
AMCG00004686 NA coding downstream 17630 56712353 ~ 56720075 (+)
AMCG00004688 NA coding downstream 30130 56724853 ~ 56729833 (+)
AMCG00004687 NA coding downstream 80482 56775205 ~ 56778426 (+)
AMCG00004694 NA coding downstream 119691 56814414 ~ 56820789 (+)
AMCG00004696 NA coding downstream 146393 56841116 ~ 56843730 (+)
G9903 NA non-coding upstream 1027 56614032 ~ 56614458 (+)
G9863 chd4,LOC107587864,LOC107671917,LOC107724784 non-coding upstream 161203 56453374 ~ 56454282 (+)
G9842 NA non-coding upstream 164553 56436762 ~ 56450932 (+)
G9852 NA non-coding upstream 187404 56424270 ~ 56428081 (+)
G9841 NA non-coding upstream 192128 56369030 ~ 56423357 (+)
G9923 NA non-coding downstream 38582 56733305 ~ 56735388 (+)
G9930 NA non-coding downstream 63961 56758684 ~ 56759246 (+)
G9932 NA non-coding downstream 70330 56765053 ~ 56773718 (+)
G9941 NA non-coding downstream 151331 56846054 ~ 56899913 (+)
G9957 NA non-coding downstream 154649 56849372 ~ 56852139 (+)
G9889 NA other upstream 73422 56538254 ~ 56542063 (+)
AMCG00004681 NA other upstream 115901 56490093 ~ 56499584 (+)
AMCG00004673 NA other upstream 255688 56315612 ~ 56359797 (+)
AMCG00004650 NA other upstream 814217 55758271 ~ 55801268 (+)
AMCG00004642 NA other upstream 1002444 55607539 ~ 55613041 (+)
AMCG00004695 gapdh,LOC107596669 other downstream 91129 56785852 ~ 56801892 (+)
AMCG00004700 NA other downstream 166631 56861354 ~ 56867131 (+)
AMCG00004707 NA other downstream 266790 56961513 ~ 57002024 (+)
G9982 NA other downstream 292183 56986906 ~ 56987644 (+)

Expression


Co-expression Network