AMCG00004656


Basic Information

Item Value
gene id AMCG00004656
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56066463 ~ 56083385 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004656
CGACGCTACGTAAACCGTGTTCGAGAATCACTAATTCTCGCCCGACAGACCGGAGCGAGCAGCTACGCTACGCCGTTTGCGTAGCACTCCGTCCGCTCTGCAGGGGGTTCCGGCGCAGTGAGCTTACGTGAATTGTGAGGGACCTGAACATATGATTAAATAAAGCGACACACTGTGCGATCTGTAATCACGTCTTTGTAGAAGGACGGAAAGTGATTGAtcgagagagtgtgagtgtgagagagggaaggagaaagagcaacacaaacacagtgggCGTGATTACCGCGGACACACTGACCGACTGCCCGGGACCGCAGCCATAAACACGGCACTGACACAGAGGACAGGCGTCTTGGCGGACAGGTCAGGTCTTGCCCTGCGATTGGCTGATTGGGGCAGCTAGTCGCCATGGCAATGCGAGAACTTGTGGAGGGGGAGTGCGGGGGAGCCAATCCGCTCATGAAGCTGACGGGTCACATGACCCAGGAGCGGGAGGGCGGAGCCTGGAGACACAGGGCCACACCTACTATCCCCACTCCTATTGAGATCGCCACAGAAGATGAgcTGGTCAGTGAGTTCCTGCAGGAACCCCCCCCtcgccccccccacaccttcAAGATGGATGACCTGCTAGTGGAGATGCAGCAGATCGACCAGCAGAACTACAGACAGGCCCCACAGAGAGCTCCAGGTGTGGCTGATCTGGCTCTCTCTGGCGATTGGGCGGCTGAGTTTCTCTCCACCCCAGACTCTGCCCCCTCCTTGGCACAGGCAGGGCTCAGCGAGACGACGGACGCTGATTGGACCAGAGAATTTATCACTGACACCACAGaccctGCGGCCCCGGTGCGCTGGGCAGAGGAGTATCTGGAGCAGTCCGAGGAGAAACTGTGGCTAGGAGAcctaggagagagagagcaggaaaaCGAGTGGACCCGGGAATATCAAGCCGGGGAGGACCTGCAGAAAACAGCCAATCAGCTGCTGGCCAAGGTCGATGACCCCAAGCTACAGAACACAGAGTTTCTGAAGTTCGTTAGGCAGATTGGCGAGGGCTCTGTCGCCATAGAGACCAgcgaggtgagagagagaactgaTAGCAGGAAGGCCGCACAGGCAGAGCACTGGGCTACTACCATCGACAAGggcTATGAGTTTGAGCAGGATAACCCGTACCTGTCTCACCCAGAGCCGCTGGCGGAGGGCCTGAGGCGTCTGGAGAGAGGAGACATCCCCGGGGCGGTGAGGCTGTTCGAGAGCGCGGCCCAGAGGGAGCCCAACAACCACCTGGCGTGGCAGTATCTGGGGACGTCTCAGGCTGAGAACGAGCAGGAATTCGCTGCTATCAGTGCCCTCCGTAGgtgtatCCAGCTAAAGGCTGATAACCTGCAGGCTCTGATGGCTCTGGCAGTGAGCTTCACTAACGAGTCTCTGCACAGACAGGCTTGTGAGACGCTGAGGGACTGGCTCTCCCAGCACCCGCGCTACTGCGCCCTGGTCCAGGCGCACACTAAGCCCCGTGGGGAGGGTGAGGCAGACCGGGACCGGGACCGCTTTGGATCGCTTCTGCCCGAgaCCCTGTTCTCGGAGGTGCAGTCTCTGTTCCTGGCGGCGGTGAACTCTGAACCCGGCGAGGTTGACCCCGATGTGCAGTGTGGCCTGGGCGTCCTCTTCAACCTCAGTGGGGAATTTGACAAGGCAGTGGACTGCTTCAACACTGCGCTGTCTGTCAGGCCACAGGACTATCTGTTGTGGAATAAACTAGGGGCCACTCTGGCCAATGGCAGCCGCTCTGAGGAGGCAGTAGCTGCCTACAGAACAGCGCTGGAACTGCAGCCAGGGTTTATCCGCAGCCGCTACAACCTGGGGATCAGCTGTCGGGCGGCACAGGAAGGGGCGGGGACGGGTGGGGCGGGGCGGGGTCGCACCGGTGGGGTGGCAGCTATGTCCGAGAACATCTGGTCCACCCTGAGGATGGCATTGAGCATGCTGGGGGAGAGCCAGCTATACGGGGCGGCCGACCAGCGGGACCTCGACACCCTCCTCTCGGCTTTCCACCTccgcgagagagagggagagggggcggggggggaggcgggggactga

Function

GO: NA

KEGG:

id description
K13342 PEX5, PXR1; peroxin-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004656 True 2109 mRNA 0.60 14 56066463 56083385

Neighbor

gene id symbol gene type direction distance location
AMCG00004659 NA coding upstream 6492 56039875 ~ 56059971 (+)
AMCG00004655 NA coding upstream 30514 56016212 ~ 56035949 (+)
AMCG00004657 LOC104943838 coding upstream 64709 55994697 ~ 56001754 (+)
AMCG00004658 tpi1 coding upstream 76643 55983450 ~ 55989820 (+)
AMCG00004651 NA coding upstream 209344 55851646 ~ 55857119 (+)
AMCG00004661 NA coding downstream 2401 56085786 ~ 56090395 (+)
AMCG00004667 NA coding downstream 34879 56118264 ~ 56130376 (+)
AMCG00004669 NA coding downstream 49176 56132561 ~ 56145764 (+)
AMCG00004666 NA coding downstream 90646 56174031 ~ 56177843 (+)
AMCG00004670 NA coding downstream 101039 56184424 ~ 56185282 (+)
G9752 NA non-coding upstream 149254 55910752 ~ 55917209 (+)
G9749 NA non-coding upstream 169940 55895668 ~ 55896523 (+)
G9723 NA non-coding upstream 208066 55810383 ~ 55858397 (+)
G9721 NA non-coding upstream 277406 55788809 ~ 55789057 (+)
G9718 NA non-coding upstream 286042 55776788 ~ 55780421 (+)
G9814 NA non-coding downstream 26972 56110357 ~ 56111372 (+)
G9841 NA non-coding downstream 285645 56369030 ~ 56423357 (+)
G9852 NA non-coding downstream 340885 56424270 ~ 56428081 (+)
G9842 NA non-coding downstream 353377 56436762 ~ 56450932 (+)
G9863 chd4,LOC107587864,LOC107671917,LOC107724784 non-coding downstream 369989 56453374 ~ 56454282 (+)
AMCG00004650 NA other upstream 265195 55758271 ~ 55801268 (+)
AMCG00004642 NA other upstream 453422 55607539 ~ 55613041 (+)
AMCG00004644 NA other upstream 460978 55568132 ~ 55605485 (+)
AMCG00004634 NA other upstream 607059 55376095 ~ 55459404 (+)
AMCG00004632 NA other upstream 704754 55295175 ~ 55361709 (+)
AMCG00004673 NA other downstream 232227 56315612 ~ 56359797 (+)
AMCG00004681 NA other downstream 406708 56490093 ~ 56499584 (+)
G9889 NA other downstream 454869 56538254 ~ 56542063 (+)
AMCG00004702 NA other downstream 580755 56664140 ~ 56896215 (+)
AMCG00004695 gapdh,LOC107596669 other downstream 702467 56785852 ~ 56801892 (+)

Expression


Co-expression Network