Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004658 |
| gene name | tpi1 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 55983450 ~ 55989820 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| tpi1 | Enables protein homodimerization activity; triose-phosphate isomerase activity; and ubiquitin protein ligase binding activity. Involved in glyceraldehyde-3-phosphate biosynthetic process. Located in extracellular exosome and nucleus. Implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency. |
| description |
|---|
| triosephosphate isomerase |
| id | name | namespace |
|---|---|---|
| GO:0006094 | gluconeogenesis | biological_process |
| GO:0006096 | glycolytic process | biological_process |
| GO:0004807 | triose-phosphate isomerase activity | molecular_function |
| id | description |
|---|---|
| K01803 | TPI, tpiA; triosephosphate isomerase (TIM) |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004658 | True | 1467 | mRNA | 0.50 | 7 | 55983450 | 55989820 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004651 | NA | coding | upstream | 126331 | 55851646 ~ 55857119 (+) |
| AMCG00004647 | NA | coding | upstream | 255051 | 55728040 ~ 55728399 (+) |
| AMCG00004646 | NA | coding | upstream | 281833 | 55701021 ~ 55701617 (+) |
| AMCG00004645 | NA | coding | upstream | 301807 | 55671958 ~ 55681643 (+) |
| AMCG00004643 | NA | coding | upstream | 330729 | 55631595 ~ 55652721 (+) |
| AMCG00004657 | LOC104943838 | coding | downstream | 4877 | 55994697 ~ 56001754 (+) |
| AMCG00004655 | NA | coding | downstream | 26392 | 56016212 ~ 56035949 (+) |
| AMCG00004659 | NA | coding | downstream | 50055 | 56039875 ~ 56059971 (+) |
| AMCG00004656 | NA | coding | downstream | 76643 | 56066463 ~ 56083385 (+) |
| AMCG00004661 | NA | coding | downstream | 95966 | 56085786 ~ 56090395 (+) |
| G9752 | NA | non-coding | upstream | 66241 | 55910752 ~ 55917209 (+) |
| G9749 | NA | non-coding | upstream | 86927 | 55895668 ~ 55896523 (+) |
| G9723 | NA | non-coding | upstream | 125053 | 55810383 ~ 55858397 (+) |
| G9721 | NA | non-coding | upstream | 194393 | 55788809 ~ 55789057 (+) |
| G9718 | NA | non-coding | upstream | 203029 | 55776788 ~ 55780421 (+) |
| G9814 | NA | non-coding | downstream | 120537 | 56110357 ~ 56111372 (+) |
| G9841 | NA | non-coding | downstream | 379210 | 56369030 ~ 56423357 (+) |
| G9852 | NA | non-coding | downstream | 434450 | 56424270 ~ 56428081 (+) |
| G9842 | NA | non-coding | downstream | 446942 | 56436762 ~ 56450932 (+) |
| G9863 | chd4,LOC107587864,LOC107671917,LOC107724784 | non-coding | downstream | 463554 | 56453374 ~ 56454282 (+) |
| AMCG00004650 | NA | other | upstream | 182182 | 55758271 ~ 55801268 (+) |
| AMCG00004642 | NA | other | upstream | 370409 | 55607539 ~ 55613041 (+) |
| AMCG00004644 | NA | other | upstream | 377965 | 55568132 ~ 55605485 (+) |
| AMCG00004634 | NA | other | upstream | 524046 | 55376095 ~ 55459404 (+) |
| AMCG00004632 | NA | other | upstream | 621741 | 55295175 ~ 55361709 (+) |
| AMCG00004673 | NA | other | downstream | 325792 | 56315612 ~ 56359797 (+) |
| AMCG00004681 | NA | other | downstream | 500273 | 56490093 ~ 56499584 (+) |
| G9889 | NA | other | downstream | 548434 | 56538254 ~ 56542063 (+) |
| AMCG00004702 | NA | other | downstream | 674320 | 56664140 ~ 56896215 (+) |
| AMCG00004695 | gapdh,LOC107596669 | other | downstream | 796032 | 56785852 ~ 56801892 (+) |
