G8188


Basic Information

Item Value
gene id G8188
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49582118 ~ 49586095 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU10096
TTCAGTAGTGCAGACAGAAGTCACTTTATTTAGATAACAGAAAGGACACAGCTTACACAAAGCAGAGATACGACGCAGAAAAGTTTAATCAGCTCCAGCACAAAAGTGGACTGATGGCGCCTCTCTTACCCTGTTGTAAAAAACTAACACGTGTGAAGCTGGACTATTTGTGAGAATTAGAAACCTCTTGCCACAAGCGCAGAGCAATGTGACGGGAACAAAACAGGATACATCAATGTAGAACTAGCTGATTGTACATCGCAGAGATGTTTCAAAGCAGAAGTTGAAAAGATGCAGCGTCCCTCTTTCTGCGCGAACGTCACATGAAGATAAAAGTTCTCGAAACCACATCACGACAAATCGAGCACCAGGTAAATTACAATTCTGCATGAGGATGTTTTAAATGGCTTCTATAGCATTCGTAAGaataacagggaaaaaaaaaagccatagGTTACGCAGCAGATGAAACAAAAGGGAAGGTGAGGCTAATCATTATTTGGGCTGCAATTTATCATAATATAGATGTTTCCAAAGCCAAATGTTCTGTAAACTGCTTTGGTTTGTACTCTGTTGCTGTAATGGAATCTTACTTCCTGCAGTATTTGTCACAACTAAACAGGACCTTTAATAGTCTCTTCAATTTcccaggaaaaaaatattatttgcatAGCACCAAACTAGCAGTCTACCATTCAAGCTCCATCCCAACATTAAAAGTGTCACTACAAAATGTCTAAATCAGCTGATAGCCATGCTGCATagatcaataaattaaaataaaaatcaattttcaataaACCACTGGACGCTGCATCTTCAGAAGCAAAGCTACACTTCAGCACTTCACAAGCTAccacacagaaatataaaaacattacctgaaaaagacctagaaatgttttgttcatatattttttcctgaccatagttcttaaaaaaaaacagaagtgtattCAAACACAGTTGTGAAAATTATGAAGGAGTGATTGTTTTTCGCAGGTACAGCAGGTGGTAAAGCAGAGATTAAAAAcgagagataaaaaaaaagaggcaTCAAATGGATGGGAGCTTTTTCCCCCCAGTAACAAACTGTcactgtaaaaaagaaaagaaaaaagccccccttaaaatgaaatgcatcaagAAACATGGAACAGTCTTAAAGCTGGCCATAACGAAAGCTGCTGTGTAACAGTAGCTCAAGTTgcattattcagaaaatgtgttgcTATGGGCGGGAGTCATTTGTACCATGCAGAAAACAGTTGTGAACACTTTCCTCATTTTCCACATTCATCTTTGCATTACTGACATGCTCTCTAAATTTAACATGCATTGTCTACTTAAGCAGTAAAGTGTGTTTGAATAACAGTGAATAACTTTAAATgctatttttactttttgagAGATTATACAAAGTATACagtgcacatacatacacataaacacacacacatatatatatatatatatatatatatataaatgttaacgTTTTTGTTAAGTTGCTGCCCAATGACTCAACAgaatgttttgtgtatttttgtacttgcgtaaattgtatgttttttttttcctgtagtcCATAAATGGAGGAATAAGAAATGACCAATCATAAAGCAGTCAGCCAATCATGAAAATGAGtaatttcaagttatttcacCTGTAGGATTATGAGCTTCATAACTGCAACCCATTGGACAGAGAGCAGCCAATCAGCGGCACCCTGCTGAGAACATTAGTCATAGaacaacaagacaaacaaaaacatttactcCTCTGGCAGAGTGAAGGATTCGAGGACCGtgtcacacacatttcagaatgACAAAGGTGACAAATATCACAGTGCTTGTGGACATGATCAGCTGGtcttttattatgtatatagaAGTAGATATTAGTGGATGACATCAACTGAAACGCTGCTAGATTTTCTTTGCAAtgacaaagagaaaataatcatCTAGTACTAcaaagaaagaggaagagaccTGTCAATGctaataagatatatatatatatatatatatatatatatacacacacacacacacacacacttaattgTTTCTTTGATAGCTGGTTTTAAAAGAGGATAAAGAGTGGGACGTTGTTTGATGGACATCAGGCGCTGGGTTCATGCTTGAGGCGCTGGCTGCGGGCCTTGTAGACCTCGATGAGCAGGTCTTTGACATACTggatctctctctccacagactCGGCCTTGTCTCGCAGTTCTCGGTTCTTCCCCTCCAGCCCCCGGAGCTCCTCCTCCAGGCAGTCCAGCTCGGCTCTCTTGCGCTGGCGATATCTGCACAGGAAAGACCAAGGCCGGTGATGCAGCTCTGACACGCAAGCACTCAAGACAAATGCATGGCAGGTAACAGAAAGGAGTCAAAGAAGACCGCTGACCGGTCACGAAGAGGTAAGCATAGACGCACAAGGTGATGGTCTTAGTGCTGTGATGTCACTGAATGGTCAATGTGAAAAAAAGGCTTCGAAAGTTTAGGTCCGGTCAGTTATGGGGTGTTACAAATAAGTCCACCTCAGAGCCCAAGTATTTAATGGtcagtaaatacaattttccaAGTTCCTTCTTGTAAGTGCAGAGTTTTGGCACTGCCTGTCATTACTGGTTTGTGATTTTCAACATGACTTCCATTCATGCTCTAATTTGGACATGGATGTCACAAACTACACACAACGGACACATGCAAGACCCTCTTGTTGTCCCTTACCTGTGAGCTGCAGTCTTGTTCTGGTCTCTCTTCTTCTGCTTGCGTTCTCCGGTTGGGGCTTCAGGGGCAGTGTCTGGCTCTGGCTTAATGTGACAGGGCTCCTCTTGCTCCTCTCTGTCTGCTCTGTGGCTGGGAGATCCCCCCTCCACTCCATCCCCGTCTCCCCCCGGCACACACTCCCGGGACTCCTCTCCCAGGAAGCCGGGGAAGCAGAACCCATGGTGCTGCTCTCCTGCCTCTAAACCCCCTGCCCTCAAAGACTCGTCTGGCCTCTCCAGAAAGCTGCTATAGGCCTCCGCTGTGGCTGTGACCTCGAGAAAACATGGCTTGTCTTCCACCTCTACCAGCTCGCCGGCTCTACCGCGGTGCTGCACCTCCACCTCCATTCCATCTTCGCTGCCACTGACCTCCTTCAAACCATACAACAACTGGCCCTCTTTCTTGTGGGTCGCCTCCAGTGAACCACCAAGGCAAAACCCACCCACCACCTTATCTCCATCGGTAACATCTTCTGTGAAACAGTAATTCTCCTCCTCTTTCAGCAAGATGGTGCTTTCCCTAACTTCTACTGCACTACCCAGGCAATATTCCTCCCCACCCACCTTGTTGTCCCCTATAAAGCAGTAGCTGACTGCCACTTCTGGACTACCTGAGAGATTTCTTTTGCAACTCCAGATGCTATTCTCCAGTCCCTCGTCTACCCTTCCACTATCAGAAGATCTCTTTCGACTACTATGGCTGCCTGGACGACTGCAATTATATGGGACTGGTCTAGGCGTTTTGGGACGGCCAACTGGACCGCCGCAGAAGCTCAGCAGATCAAGCTCCCCAGTTGCCAATGTAACGAGCAGTGGGCTGGATTCTGACTGGCCCGAGTTGTAAGGGGTATAAGGCAAATGATAGTAAGACTGGGGGCTTGCTAGGAGAGATGCTTTGTCAGATTTTTCCAATTTCTCTGCTTTCTCCGATTCCGATTCAGACAGGAAGTAATCCTCCAGTTGTGCCAGCTCTTCCTGCAGCAGAGAGGTCATGACCTCCAGGTCAGAGGGTACCTGGACATCATGCTGGgggggtgagggagggagggaggggttgggtgagggagaggagtgagagggagggaggtaaGAGGAGAAATCCACTTTTTCAGTCATCCAGTCGGTGAGACCATCGC

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10096 True 3918 lncRNA 0.44 2 49582118 49586095

Neighbor

gene id symbol gene type direction distance location
AMCG00004430 LOC107598122 coding upstream 10818 49547269 ~ 49571300 (+)
AMCG00004431 NA coding upstream 59205 49519124 ~ 49522913 (+)
AMCG00004427 NA coding upstream 152310 49425765 ~ 49429808 (+)
AMCG00004428 NA coding upstream 170551 49403208 ~ 49411567 (+)
AMCG00004426 LOC106580931 coding upstream 289050 49279160 ~ 49293068 (+)
AMCG00004434 NA coding downstream 22784 49608879 ~ 49631014 (+)
AMCG00004437 NA coding downstream 171026 49757121 ~ 49772253 (+)
AMCG00004441 dpagt1 coding downstream 211448 49797543 ~ 49804404 (+)
AMCG00004443 NA coding downstream 229178 49815273 ~ 49817818 (+)
AMCG00004454 NA coding downstream 297291 49883386 ~ 49893011 (+)
G8167 NA non-coding upstream 146367 49434043 ~ 49435751 (+)
G8140 NA non-coding upstream 334084 49246488 ~ 49248034 (+)
G8111 NA non-coding upstream 552935 49024156 ~ 49029183 (+)
G8103 NA non-coding upstream 622287 48955967 ~ 48959831 (+)
G8083 NA non-coding upstream 733992 48847526 ~ 48848126 (+)
G8356 NA non-coding downstream 480340 50066435 ~ 50068081 (+)
G8371 NA non-coding downstream 551534 50137629 ~ 50139705 (+)
G8372 cbl,LOC107601723 non-coding downstream 557210 50143305 ~ 50144990 (+)
G8373 NA non-coding downstream 559276 50145371 ~ 50145823 (+)
G8374 NA non-coding downstream 561781 50147876 ~ 50148195 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 263283 49298736 ~ 49318835 (+)
AMCG00004424 NA other upstream 522063 49043590 ~ 49060055 (+)
AMCG00004421 NA other upstream 555763 48897117 ~ 49026355 (+)
G8099 NA other upstream 648023 48932450 ~ 48934095 (+)
G7999 NA other upstream 1434962 48146888 ~ 48147156 (+)
AMCG00004442 NA other downstream 220266 49806361 ~ 49814024 (+)
AMCG00004449 NA other downstream 352457 49938552 ~ 49951533 (+)
G8377 NA other downstream 565169 50151264 ~ 50157719 (+)
AMCG00004463 NA other downstream 650582 50236677 ~ 50243043 (+)
AMCG00004477 NA other downstream 1155293 50741388 ~ 50753432 (+)

Expression


Co-expression Network