AMCG00004791 (calr,LOC102308154,LOC102192544,LOC101484884,LOC107393148,LOC106512241,LOC100701980)


Basic Information

Item Value
gene id AMCG00004791
gene name calr,LOC102308154,LOC102192544,LOC101484884,LOC107393148,LOC106512241,LOC100701980
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3251970 ~ 3262480 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004791
CGGCGGAGAGCAGGCTCACAGGAGGGGGAGTCACAGAGGGGACAGGCGGAGAAAAttggaaatataattatttacaaaacaaattgatatCGTGTATAGTGTAGTTACAATCAAACGGCATTTCCCCAATATGAAATTCTTGGTGTTGGCGGCCTTAATGGCTGCATCTTGCGCTGAGCCTGTCGTTTATTTTCGGGAGCAATTTGATGATGAGGATGCCTGGAAGAGCCGCTGGGTGGAATCCAGACACAAGTCGGACTACGGCAAGTTCGTCCTGACAGCCGGGAAATTCTACGGTGATGCCGAGAAAGACAAAGgtctgcagaccagtcaggatgCCAAGTTCTACTCTCTGTCATCACGGTTTGAATCGTTCAGCAATGAGGGGCAGACATTGGTGCTTCAGTTCACAGTAAAACATGAGCAAAGCATCGACTGTGGAGGTGGTTACATCAAAGTGTTCCCAGCAGATCTCAACCAGGAGGATATGCATGGGGACTCCAACTATAACCTAATGTTTGGTCCTGATATCTGTGGTCCTGGCACCAAAAAAGTTCATGTTATCTTTAATTACAAAGGAAAGAACCACTTAATCAACAAAGACATTCGATGCAAGGATGATGAATACAGTCACTTGTACACACTGATTGTCCGCCCTGACAACACATATGAAGTGAAGATTGACAATAAGAAGGTAGAGTCTGGCAGCCTGGAGGAGGACTGGGATTTCCTGCCACCCAAGAAGATCAAAGACCCTGAGGCCAAGAAACCTGAGGACTGGGATGAGCGGGAGAGGATTGACGACCCTGAAGACACCAAGCCTGAGGACTGGGATAAGCCTGAAAACATTCCTGATCCTGATGCCAAGAAGCCAGAGGACTGGGACGATGAAATGGATGGTGAATGGGAGCCTCCGATGATCACCAACCCTGAGTACAAGGGTGAATGGAAGCCTCGCAAAATTGACAACCCTGACTTCAAAGGAAAGTGGGTGCACCCAGAAATTGACAACCCTGAATACACTGCTGATGCTGAAGTCTACAAGTACGAAAGCATTGGTGTCCTTGGGCTTGACTTATGGCAGGTGAAAAGTGGCACAATCTTCGACAACTTCCTGATCACAAATGATTCAACATTTGCTGAAGAAGTGGGCAATGAAATGTGGGGTGCAACCAAGGACCCAGAGAAGAAAATGAAGGAGAGCCAGGAGGAAGAAGAGCGAAAGAAACGTGAGGAAGATGAGAAGAagataaaagaagaaacaaaggaggaggaggaagagggggaggagcaGAAAGAGGTGGAGGATGATGAGGAAGAAACAGACTCTAACCTCAAAGATGAGCTGTAATCACACAAACTCAGAGACACTCTGCCTGTTAAGAGACacttgggggaggggggttggggACCCTGCTGGACTTTGTTCACATTTTAGGCAGGCCTTGTAAGGGCTGGTCTTatcacaaaagaaagaacaaatcttggattttattttattttatgtttcccATAATCTCAACCTCCTTGTTTGAATTTCCCCCATAACGAACAAAGCAATGATCATCTGGCTGAGGCTTAGGGAATCTTGGCCAGTGTCTGCAATCAGCTTGTTGCTCTGGGTAAATCCAGTCCGTCGGCACCAGCAGAGAGCTTTGCCAGGGGAGGAGGATAGTCATTCATTCTTATGGGGTGGTGGCAGGTGGAATCAACTtgctgttattttcttatgttttaaaagacCAGTGTAATCTCTCAAACAgatagtttatatataaactgtatcaTTATTGTGcccctttcttgtttttatatgaattaatgcattgtttgcTCTAACCATTGAAATTAGTCTTcctttttctgtaattttgctCTGTAACCTGTTCATTTAAAACCTCAAGATATTGCATATTTCTAAAGATCATCATTTGAAAGCcttccatttactttttttttaaacatgttgtcCTCCCATGTCTGTCAATAGTCATATTGCACTTGAGTGAATGTTGTAAACGGTCATCTGTTAactcatcctgctgcttttacCGATGGGTCATTCGGACCTTATGTGTGGATGTTGAAAGTGCAGCTGAATAAATCCATATGGTCATTGGCTCTCCAGGATTTGTGACCTCATTTAGATGGGTTGATATTTCCAAtcattaaactgtttaaaaccccttttaaattaatgttatttatttttttcaatctaTGAACTGATTCCTACAGATACTGAACATTTGTTTGTAGGATTGTCCTGCTTGGCCTGTGATCAGTGGTTGTAGTTAACTACGCAAATCCGAATTGAAGATAAtctatgcctttttttttttttttttttttttttgagaaactAAGTGGTGTGGGATTGCTTT

Function

symbol description
calr Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including hatching gland; nervous system; notochord; polster; and trigeminal placode. Human ortholog(s) of this gene implicated in essential thrombocythemia; myelofibrosis; sideroblastic anemia; and thrombocytosis. Orthologous to human CALR (calreticulin).

NR:

description
PREDICTED: digestive organ expansion factor-like isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004791 True 2384 mRNA 0.43 9 3251970 3262480

Neighbor

gene id symbol gene type direction distance location
AMCG00004786 NA coding upstream 249045 2998006 ~ 3002925 (+)
AMCG00004784 NA coding upstream 299346 2952311 ~ 2952624 (+)
AMCG00004783 elavl4,LOC107657884,LOC106613894 coding upstream 693297 2548607 ~ 2558673 (+)
AMCG00004782 elavl4,LOC106613894 coding upstream 761280 2490454 ~ 2490690 (+)
AMCG00004775 NA coding upstream 1794720 1435263 ~ 1457250 (+)
AMCG00004792 NA coding downstream 40023 3302503 ~ 3307925 (+)
AMCG00004795 xpr1,xpr1a,LOC106584313,LOC106613915,LOC105029208 coding downstream 270004 3532484 ~ 3556450 (+)
AMCG00004798 mfsd14a,LOC106613595 coding downstream 330920 3593400 ~ 3627243 (+)
AMCG00004796 NA coding downstream 370413 3632893 ~ 3642414 (+)
AMCG00004797 NA coding downstream 416028 3678508 ~ 3688735 (+)
G143192 NA non-coding upstream 15623 3234653 ~ 3236347 (+)
G143170 NA non-coding upstream 152586 3099122 ~ 3099384 (+)
G143166 NA non-coding upstream 165576 3084372 ~ 3086394 (+)
G143109 LOC103376870 non-coding upstream 490340 2720298 ~ 2761630 (+)
G143107 NA non-coding upstream 570422 2681304 ~ 2681548 (+)
G143195 NA non-coding downstream 48427 3310907 ~ 3376024 (+)
G143218 NA non-coding downstream 114589 3377069 ~ 3377271 (+)
G143237 NA non-coding downstream 318602 3581082 ~ 3588105 (+)
G143302 NA non-coding downstream 426678 3689158 ~ 3690193 (+)
G143356 NA non-coding downstream 644113 3906593 ~ 3906921 (+)
AMCG00004788 NA other upstream 91761 3123081 ~ 3160209 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 692890 2440541 ~ 2559080 (+)
AMCG00004749 NA other upstream 3129005 116491 ~ 122965 (+)
AMCG00004793 NA other downstream 115335 3377815 ~ 3395158 (+)
G143366 NA other downstream 686946 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 846542 4109022 ~ 4109655 (+)
G143471 LOC107575789 other downstream 1109229 4371709 ~ 4372089 (+)
G143626 NA other downstream 2161223 5423703 ~ 5424121 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036320 calr coding NC_007119.7 CM002892.2 16582339 ~ 16592491 (-)