AMCG00004796


Basic Information

Item Value
gene id AMCG00004796
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3632893 ~ 3642414 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004796
GCGGGCCGCAGCTTTACGACTGTTGTCATGGTGCCCACAGCAACGGCAAACTCCCCGGCCGGGTGTGAGCATGCGTCAACGTGTGCTGCGGGAACAGCGCTCACACACACCTACTGCACTCTCTGGGCCTGGGACTTGGTAGGGTCTGCGTTGGAGTCGTCGAGTTGCGGCAGAAACATGTCGGAGGACGGGGTGTCCGCTCCTCTGCTGGGGAGATGTGGCTTCTACGTGGAGAAAAAGAAGCGCTAttgcaaaatggttgttgcCAAAGGAAAAACCTTCTGCGGGGAACACGCCATTGCCGCAacgCAGGAAGATGATAGAAAAAGAATCCCCTGCCCTTTGGATCCCAAACAcaCAGTGTTTGAAGATCAACTTGCAAAGCACCTCAAGAAGTGCAACTCTAGAGAGAAACCCAAACCCGTGTATTACATCCAGGACATTAATGCTGGCCACGAGGAGGATGTGGAGCAGatGCCCTTGTCTTCTAGATCGAAAGAAGATCTGGATTTGCTCATTAAAAGGTTAAAGAAAGCAATAAGGGGGCTAACCTGTAAACATGAGGAAAAAATATTATCTCACACTGCTTTGCATGAGGCTCTGAACGATACGAAGAATGGAGACTTTGCTTTCAAACACCTGAAGCAGCAGGCCTCCATTTTAGGTAAAGTGCCCTTCTTGAGAGATCAGAAGCCCCCAGTGGTGGGAATTGGCAAACACTTGTGTGGAACAGCTACAGATCTTGCTCTGAGGTGTTTGCTGGAGAGCCACCCCTGCAACAGTGAGGCTAGGGATACAGAGCCATCACAGAAACGCCTGAGGCTGGAGCTGCCTGATGGAGGGAGTGGGGAGGTGGAGGAAGGCCAGCCTAGCTTGGCCCCAGATCCCAGCTCAGAGGCAAGAAAGGGGCTGAAGGTGGCAGGGGTGGCCATCGCGCTGTGCTGCCATCATCGCTGCGACTGGAGGCACTACGTGGGCAGGGAGTTCTTCAGAGTCCTGGGGCTGGGGGCCACGGAGTTCTCGGCCTTCCAGCGCATGTCAAGCTGGGCCACCTGTGGCCTGAGGAGGCCCCACAGTGACCGGACTCCCCCACAGGAAAACACAGAGGACCAAGAGGAGCATGAGCAAGGAGTGGAGAGTGAGAACAGCTTTGATGGGGTGCTCTGTGCTGAAGACCGGGAGCACATTGGCCGTCTCTGTAAGCTCTTGATAGATCACGGCCGGGTGTATTACCTGCAACAGAAAGGCTACACGGCTATGTTACAGTACTACACCAGTCCGGATGTCTCCTTGGAGAACGTGCTGCTCACTGCCTTCCCTGCCAAGACTACATAACACTTCTGAAAGCCCATTCTGCACAGCTGCGGTTTATCAGTGGGTGAAAGCAGGTGGGGTGTAGACATCTCTGAAGGGAAAGTTTTAAGTTTGCAGAAGGCATCTCTCTTGACTGGGTGACcaacagtggagagagagaaagctgaAGTGGAACCCCACTGCCACTCTCTCACAGTGTCAGCGTCTCCTTCACCGCCTCAACTGTCACGTTTAATACAGACGTGTAATTTGTATTGGatcctaaaacaaaaatgaaaaacatttgatttttttattatattttttttaactggctATACAaatttttccattaaaatccTTCAGTTTCCATCATGAAA

Function

GO: NA

KEGG:

id description
K15446 TRM13, CCDC76; tRNA:m4X modification enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004796 True 1673 mRNA 0.52 11 3632893 3642414

Neighbor

gene id symbol gene type direction distance location
AMCG00004798 mfsd14a,LOC106613595 coding upstream 5650 3593400 ~ 3627243 (+)
AMCG00004795 xpr1,xpr1a,LOC106584313,LOC106613915,LOC105029208 coding upstream 76443 3532484 ~ 3556450 (+)
AMCG00004792 NA coding upstream 324968 3302503 ~ 3307925 (+)
AMCG00004791 calr,LOC102308154,LOC102192544,LOC101484884,LOC107393148,LOC106512241,LOC100701980 coding upstream 370413 3251970 ~ 3262480 (+)
AMCG00004786 NA coding upstream 629968 2998006 ~ 3002925 (+)
AMCG00004797 NA coding downstream 36094 3678508 ~ 3688735 (+)
AMCG00004805 cdc14a,LOC106613592 coding downstream 60071 3702485 ~ 3720008 (+)
AMCG00004804 cdc14a,cdc14ab,LOC107588060,LOC107653633,LOC107669826 coding downstream 102618 3745032 ~ 3764307 (+)
AMCG00004803 NA coding downstream 134949 3777363 ~ 3778397 (+)
AMCG00004806 NA coding downstream 140384 3782798 ~ 3791933 (+)
G143237 NA non-coding upstream 44788 3581082 ~ 3588105 (+)
G143218 NA non-coding upstream 255622 3377069 ~ 3377271 (+)
G143195 NA non-coding upstream 256869 3310907 ~ 3376024 (+)
G143192 NA non-coding upstream 396546 3234653 ~ 3236347 (+)
G143170 NA non-coding upstream 533509 3099122 ~ 3099384 (+)
G143302 NA non-coding downstream 46744 3689158 ~ 3690193 (+)
G143356 NA non-coding downstream 264179 3906593 ~ 3906921 (+)
G143380 NA non-coding downstream 441685 4084099 ~ 4089273 (+)
G143403 NA non-coding downstream 459848 4102262 ~ 4103856 (+)
G143405 NA non-coding downstream 470847 4113261 ~ 4113488 (+)
AMCG00004793 NA other upstream 237735 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 472684 3123081 ~ 3160209 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 1073813 2440541 ~ 2559080 (+)
AMCG00004749 NA other upstream 3509928 116491 ~ 122965 (+)
G143366 NA other downstream 307012 3949426 ~ 3949837 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other downstream 466608 4109022 ~ 4109655 (+)
G143471 LOC107575789 other downstream 729295 4371709 ~ 4372089 (+)
G143626 NA other downstream 1781289 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 3966487 7608901 ~ 7624070 (+)

Expression


Co-expression Network