AMCG00004979


Basic Information

Item Value
gene id AMCG00004979
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11890664 ~ 11896684 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004979
ATGTCGGACGGGAAAGAGGAGAAGAGAAAATGTTGCCTATCTCAAAAAGGATGCAACATGCTAGCAGTCACAGTTTTCGTATCTGCAGTTCTTGTGATCATCACAGTCACTTCTCTCAACAGAAGTCCTCCTCCAGATCCTGCGCCAGAACCATCCTTCCCTACTGGAGGAGATATGCTTGACTATCTACTGCACCTTGGTTACATAGACAAGAAAGATGGACTGCAGGTTTCCTGGTACCAttctgcaaacaaaaaacatgaaatggagcaagctctgcaaaGTGATGCGATGGTCCTTGAGGCTGACGTTAATTTGGAAGGATACAACACAGCCAACCAGACCAGTATCCCAGTCATGGCCCATCCTCCTGCTATCTACAGTGATAATACTCTCCAACAGTGGCTGGAGGCTGTTCTCAAATCAAAGAAAGGTATAAAGCTGGATTTCAAAAGCCTTGAAGCAGTGGGTCCTTCTTTggacattttaataaatcaagtgTCAAAATCAGGAAAGAACAGGCCAGTGTGGCTGAATGCAGATATTCTCCATGGTCCCAATGTGCCTGGGTTGGTGCCTGTAGTTAACGCCACAAGGTTTGTGTACCTCATTCAAGAGAAATTTCCTAATGCCACCATATCTCCAGGCTGGAAGGCCGTCTACTTGTCCCTATTTCCCAACAAGACCTACACACGTGCCATGGTTGAGGAAATGTATGAGATCATAAAGAATATCCCCCAGAAAGTCACCTTCCCGGTGCGAGCAGTCATGTGTAAACTGGCCTGGCCACACTTCAGCTGGCTGCTGAAGCAGTCTCCCAGTTACAGCCTTACACTGTGGCAGGGGAAGGACGATCCTGTCAGTGTGGACAACCTGTTATTCATACGAGACAACAGCCTGCCAGAGCAGATCTACTATGACATCTACGAACCAGTCCTGTCACAGTTTAAAGAGGCTGCAATGCAGAGAAACCAAACGAGGAGGTTTTACCCCGGAGGAGACCTGGTCGACTACTTCAAGCCTGAGAACTCCGATGGTTTGAATATCAAGTGGCATACAGTTGGCAACGGCATGGCTCTGATGTCTTTACTCAGAGATGAAGACAGGGGCATGCTGGTGATTACAGTGGGCTTCAGAgaaggcagttcagaggcgcTGATGGTGGAGAGCTCCACACCAGAGCTGGTACTGCAGGACGCCCTACGTGTCATCTACGCATCTCCCAAACCCTGCGGTATTTACCTCCGAATCAGATCACAGGACGCACTCGCTCCCACCCTCAGGCTGCTCAGACAGGACTACGAGGACAGCCTCCTTCACCACCCAATATGGATAAACATGGATATTATCTATGGAGGATTTCAGACTCCAGGGTATATGGATGGTGAAGAGTTTGTGGCAACCATAAATGACATCTTCCCCTTTGTAACTCTGGCCCCCGGCTGGCCTAAAGAGCTGCTGAGCCAAGGCTACACCCCGGCCTTAGTCACGGACATGATCCAACTCTTTGACGGACAGTGGCAAGAGGTATCGTTCCAACTGCAAGCTGTGCCTCTGGGGAAGTCCGTCCCCGGCCTCAGGCAGCTGCTGCAGAGCACACACAGGTTCTCCCTAACAACAGAGCACCAGCCTGAGCAGGGGAGCTATTCTTCTGCATACCAGGGACTGACCTTAATCCGCCGAGGAAAAAGGGACAGAGTCTTCTACAATCTTGCGGGAAACTACAGAAGCAGCTTTTTCACTTCTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004979 True 1749 mRNA 0.50 8 11890664 11896684

Neighbor

gene id symbol gene type direction distance location
AMCG00004978 NA coding upstream 793 11883083 ~ 11889871 (+)
AMCG00004992 NA coding upstream 24226 11860415 ~ 11866438 (+)
AMCG00004991 erich3 coding upstream 40423 11841166 ~ 11850241 (+)
AMCG00004993 cryz coding upstream 49967 11838946 ~ 11840697 (+)
AMCG00004974 slc44a5,LOC106613541,LOC106574020 coding upstream 108519 11759921 ~ 11782145 (+)
AMCG00004977 NA coding downstream 59494 11956178 ~ 11979422 (+)
AMCG00004986 NA coding downstream 88576 11985260 ~ 11999730 (+)
AMCG00004984 NA coding downstream 106751 12003435 ~ 12007140 (+)
AMCG00004982 NA coding downstream 112227 12008911 ~ 12010194 (+)
AMCG00004985 NA coding downstream 118891 12015575 ~ 12017405 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 213759 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 217149 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 218179 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 219222 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 313417 11570936 ~ 11577247 (+)
G144788 LOC104960733 non-coding downstream 202680 12099364 ~ 12192733 (+)
G144804 NA non-coding downstream 297442 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 299588 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 342807 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 359604 12256288 ~ 12257869 (+)
G144677 NA other upstream 227296 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1875240 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2139887 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4156605 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4198303 7672816 ~ 7692361 (+)
G144940 NA other downstream 883896 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2258471 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3482915 15379599 ~ 15384811 (+)
G145932 NA other downstream 5868573 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6918345 18815029 ~ 18821642 (+)

Expression


Co-expression Network