AMCG00005146 (fam102bb,fam102b,LOC107698400,LOC107555630,LOC107696175)


Basic Information

Item Value
gene id AMCG00005146
gene name fam102bb,fam102b,LOC107698400,LOC107555630,LOC107696175
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16890427 ~ 16903809 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005146
TCTTCTTAGGGAGGCAGTGCAAGCTAATTGTGTTCGTTGGAGGATGAAGTTCTCATTTCTGTGTAAAATGAGTGCCAGTGCCAGTACAGGAGTGTTAGACCCCTGTGTGTGCCGGGTATCAGTCCGCAAGGAACTAAAAGGTGGAAAGACTTTTGCAAAGcttgGCTTTGCTGACCTAAATCTAGCTGAGTTTGCGGGCTCTGGGAATACCACACGGAGATGCTTACTGGAGGGTTATGACACCAAGAACACACGTCAGGATAACTCCATACTGAAGGTGGTAATCAGCACACAGCTGATGTCAGGAGACCCATGCTTTAAAACGCCTCCCTCCACTGCAATGTACATAGGGATACAAGGAGATGCAGAATACTTGCATGAAGATAGAAAGGGAGGAGACACACAGAAACCATTCCTTGGAATTTCAGAGACCCAAGGAAAATGTGCCTCTGTTCCTGATGAACTGGGGGTGTGCGGGCACTCCAGAACCTCGAGCTATGCTAGTCAGCAGTCTAAAGTATCAGGATATAGCACAGGGCACTCGCGCTCCTCCAGTCTGTCCGAGCTCTCGCACCGGAGGAACACCTCGGTCGGCAGCGCGTCAACCGGGATCGCGAGCATCCCCGAGCCCAGCGACGAGAGGGAGGCCCGGGCCAGGCCCATGCCAGAGCACCTCACCCCCATCAAAAGCGCGTGCTCCTCCGAACGCCTCAGCAGACACCCCATGAAGCAGGACTCGATGGAGTCTCAGCTGAAGCGGGTCGATGCCACGAGAGTAGATGCCGATGACATTGTGGAAAAGATCCTGCAGAGTCAGGATTTCACGCACAGCTTGCTGGACTCCAGCGCAGAAGaagAGGGTTTGCGGTTATTTGTTGGTCCTGGTGGTAGTACTGCTTTTGGAAGCCATCACCTCCCCACAAGGGTTGGAGCTGGAGCTTACGAACAAGTGGTGATAAAGCGCTAAAAACGCAGGTGCTCTGGCAGACAGCTGTCAGAGCCAAGATGGATCCAAAAGGGGGGTGGCAGCGACCACGTTGAGTCTCACTTCATTCCAACTACACCTTTCTAAAACTTGAAACCCAGGTTGGTATTAAAAACTGCAGAAGGCCTGCGTAAATGGCACCCTCTGGTGTCGACTAAGTGAGGATGTAACTTAGCTGAAATCAATACTGTTTATTTAGCAGAGGCGACGGAGGGATGTCAGAGAGAGGAAGAATGTATCATTTTTCTGTAAAAGCTGTAATATACCACTGCTCGGGAAGTCTGATTATTTCCCAGGATCGCTACAGGTCCAGCACAATTTCAATGTTTGGCCAAGTGGTGTGAGCAAGCTGAAGCCCCATACTCCATCAGAAGGGATTTTAAAGACTGTATTTGTGTCCTGTAAATCCTCCGCTTCTGATCATTTTATAAGACccgtttgttgtttttgcttttgttttattatttctgtttctttgttgGATTAATTCTGGGCTTCCTACAATTCCGTTTTATCAATGTTTATTCATGAGCTGCTAAATAGTGTTTACTCGGTTTCTTAAAATGTCAAGGTATTTCAGAAATAGGTGTTTACTGCTGGCATTGAAGTCTGACTGTCTGgcacagtgttttttgttttttatttgtgatttatttaaaatttataGTACAAACCTTTTTCATTATGACATTTAAACTGACTAAAAGACTGTAAACTCAGGTAATTCCACTTTTAagtaaacacaatgaaaagctgcctttgtttttttttttttgtctcttttaattttcctgtttgtttgtgtgtttgtttggctttttcttttcatcaagacatattgtttaatttgaaagaaaagttaaataattattttgcgTAGTGCATAGTTGGGTTTGTGGGATTGTTTAAGTGAAAAACTGCATCCCAGTATTGGGAAGAACAGATTGACCACAAACTTCAGAGAATCGCGGTTGATTTCTTTAAGCTTTATACTGCCAGTAGAACtatatgctttaagtgtagtTTACAATATTGTTTGGAAAGAGGCTTATTGGGTTCTATCTGTTGTGCAGCAAGGCCATGATattcagtaatgtgtttttaattaaacagttatGCTATGAAATGCCATACATCTTAATAGGTGTACTCTGATAGACACatcagacattttttttactcccgagtttgttttagttttgttaatgATTTAAGTTCCAGATTTGACCTCTAAGTGTCAACAGAGATCTGTGGCGGAATTATTTAAGATTAAGTAAACGCCAAGGCCCGGCTTATTCATGAGTTATTTGCACTGTGTTTCATAAAAGGGGGAATCTGCAAGCATATTGAATTACAATTTTTGTATTGGATGACCTTAGACTTtccaaaacaaaagagaaaagactTTATAGATTAGGATCCAGAATAATTTGGACTCAAGTCCATACATGGTCAGACGCAAAGCTCCTGTCACCCTAAATTGAGTATTTTGATCAATTGATAATTCTGAAttgttaacattaaaaataatgcatacgtttaattaaagcattataTGGATTTGATGCTGtacaacacaaagaaaagaaaaaaaggtctTTGCAAACATGTACAAGGTTTAAGAACCTGtaacaaatataacaaaactcaCCTGCTGGTCAGTGTGATCTAAAAACGAGTTAATGGCAAAACGATGAACAAATGCAGAAAGCACAGAAAGAATTGATGCAAATAGTGTACTATATTACAAACTAAATAACCCTTCTGGAGATTCATGGATAACGGTTATAAACTAAAGCGAATACATGTGTTTAAAGATAAAGCTGCATTTATGATTTAAATCAGCTTGtagaacattttcaaatagtgTTTGTGGAATAAAAAGCTAATCTAGGACATAATTTCTGACTTTAATCACTCCAGGACATGGCTATCCAAGCATTCATTTTCAGCAAGGTAGAAATAAGTGTTCTGCTAAAGCACAGCTGGATCAGATCACCATAcatgtggatgtgtgtgtatttcatacAATTATAGACAGCCCCTtccatatttgtatatacatgcGTGTGCAAGTATTTCCATCCATACAACAGTACGTCCAGATTTACAGTAGCACCTGCCCATAGCTGCCAAAGCCAGGCTATCCTACGCACTGTGAGTCGCATGTGGACTGTTACCAGCCCGTCTGTCCACTAGACCTTCCTAAGAATAATCTGGACTATACTTCTCCATTCCAGCAAAGTCTGACTTGTATTCAAAGTTCAGGTTCCTCTTGGGGAAACATGGTGGCTCCATGATTGGAGATGGAGAATGAATGAGTAGCTTAATCTACATCAGCCAATAAGCATGTCTACATAATGAGTATATATCATTACTCGAGACATCCAATAGAACCGTATATGAAGGGTAACAATGAAACTGTAACTGAAACGTACTTGATTAAAGTATCTACACAGAGACGGAATGGAACATGAAGAGTTAGTATTGAATAGTAGGAGGGAAAGGCTTGCATTATAAAACATCGGCAGTTTTCTCCCACGCATCTTATCATCGTTTAGCACAACTTAGCACAAATTAAattgacacatttttttatgcGAGACAATTATTTTGGCGTTGAAGTTTGAATCTTTTGAAATGTGGatatacaatgttttactttgtgcCACCTAGTGGTGTAACATGTAATCAGTTGGAGGACTATGTAGTTGTTTGTCTGAAATGACCTTAATACCAGGCACCCAGCCACTGAAGAGGATGCAATTATCGAAATGAAATCCATTGTAAACAACTGAATGAAGAATTAAAATGGAGGTTTTAACACACCCAGTCTTTTGAACATAACTTAATTACTCTATGTTAACAGCTTTTGTAATCACCAGtgacagttgtgtgtgtgtgtcgcatTCTGAGAGCTCGACAACTTTGAACACGTAGCGTTCAGTTGTGTATGAACCATATTCATGAGCAGTGTGCTTTCTGTCGTGTTAAACACTCACTAGCTGGTGTTTTAAGAGGGAACCGTTCAACTATTTTGGGGTCTCTTCAATGAATAGTTCTCACTATGTTTTTCCACAAGGGTAATCCAGGAACCAGCTTCTTTGTGTGTATGGATCCATTATATActcacaaatgcacacataaaCAATCTAACAAATCTGTGTTTTGAAGTTTTTGTTGAATTGGTCAGTGGCTTTCCTTGTAAGTACAGTACCTCCATATGTCAAAAGATAACTAAAGTAGATGTGATCAGAAGAGAACTGTATCGGagggtattttatttatttccaccaCGGCCGATTTTGTCAAGACTGGGGACAGGGACAGCAGTTAGGTGGTGGGGGCACAGCCACGATACTCCTACGAATATAGCTTTAAATCCAGTCTTCTGTACTCTTACTGCATATAACATTCATAACACACCAAAATATTTTACTATCGTACAGCCTAATTGTTTATTAGAAACttacaagaaaatgtgaagTGACACctaaaatgctttttgtaaCTGGGGAATGACCTTCATATTTGTAAGactattcatatttatttcatgatcTAATTCTAGGTACTGAATTTATTGTAATAATTCAACatgactgtgtttttttattttttatttttcttggagCTTTAATTTTATAGGGCTGTTACGGTTTATTACTGTAAAGTGAAGTCGGGTATGTTTGTCCAGTGTTTAATAACCTGAAAGTCAGAggtgtctttctgtgtttcaATGAGATTTTGCCTTTGTTCCCAGCACATTTACACATGTACCGTgtactgaatattaaaaaataaataaaaaaatgtacagattaa

Function

symbol description
fam102bb Orthologous to human FAM102B (family with sequence similarity 102 member B).
fam102b Orthologous to human FAM102B (family with sequence similarity 102 member B).

NR:

description
PREDICTED: protein FAM102B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005146 True 4810 mRNA 0.40 10 16890427 16903809

Neighbor

gene id symbol gene type direction distance location
AMCG00005138 NA coding upstream 28851 16856385 ~ 16861576 (+)
AMCG00005135 NA coding upstream 132193 16750701 ~ 16758234 (+)
AMCG00005134 ntng1 coding upstream 144781 16692897 ~ 16745646 (+)
AMCG00005137 NA coding upstream 200017 16668726 ~ 16690410 (+)
AMCG00005130 prmt6 coding upstream 240501 16648880 ~ 16649926 (+)
AMCG00005145 prpf38b,LOC103395982 coding downstream 4390 16908199 ~ 16913035 (+)
AMCG00005147 NA coding downstream 57728 16961537 ~ 16969965 (+)
AMCG00005144 gpsm2 coding downstream 90002 16993811 ~ 16999021 (+)
AMCG00005160 ddx59 coding downstream 208141 17111950 ~ 17116566 (+)
AMCG00005161 NA coding downstream 213854 17117663 ~ 17144393 (+)
G145630 NA non-coding upstream 658574 16229288 ~ 16231853 (+)
G145593 NA non-coding upstream 843233 16036612 ~ 16047194 (+)
G145577 NA non-coding upstream 935749 15953615 ~ 15954678 (+)
G145435 NA non-coding upstream 1632764 15255889 ~ 15257663 (+)
G145418 LOC106560501 non-coding upstream 1646181 15242385 ~ 15244246 (+)
G145731 NA non-coding downstream 10206 16914015 ~ 16914225 (+)
G145744 NA non-coding downstream 33018 16936827 ~ 16937075 (+)
G145782 NA non-coding downstream 109668 17013477 ~ 17013714 (+)
G145783 NA non-coding downstream 114159 17017968 ~ 17018375 (+)
G145785 NA non-coding downstream 127827 17031636 ~ 17031863 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 1505616 15379599 ~ 15384811 (+)
AMCG00005060 LOC106599426 other upstream 2702098 14155155 ~ 14188329 (+)
G144940 NA other upstream 4109257 12780580 ~ 12781170 (+)
G144677 NA other upstream 5227059 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 6875003 9948410 ~ 10015424 (+)
G145932 NA other downstream 861448 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 1911220 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 2571330 19475139 ~ 19530453 (+)
G146305 NA other downstream 2675764 19579573 ~ 19579807 (+)
G146519 NA other downstream 3278545 20182354 ~ 20184643 (+)

Expression


Co-expression Network