AMCG00005130 (prmt6)


Basic Information

Item Value
gene id AMCG00005130
gene name prmt6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16648880 ~ 16649926 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005130
ATGTCCCAATTCATAAAGAAGAGGAAGTTGGACAAAAGTGCCCAGGACCACCTGTACTTCGACAGCTACGCCGATGTCGGCATCCACGAAGAGATGATCGCGGATAAAGTGCGGACTAATTCATACAGGCTGGGCATCCTGCGGAACAGCCCGGCGATCCGGGGCAAAGTTGTGCTGGACGTGGGCGCGGGCACCGGCGTGCTCAGCATTTTCTGCGTGCAAGCCGGGGCTCGCAAGGTCTACGCCGTGGAGGCCAGCGCCATCGCCGAGCAAGCCAGGGACATCGTCCGGCTCAATAAGATGGAGGACAAAATCGACGTGATCAAAGGCACGCTGGAGACCACCCATCTGCCCGAGGCGGTGGACGTGATTGTCAGCGAGTGGATGGGCTACGCGCTGCTGCACGAATCCATGCTCAACTCCGTGCTCTTCGCCCGGGACAAGTGGCTGAAACCCGGCGGGCTCATCCTGCCCTCCAAGGCGGAGCTCTACATCGCTCCCATCAACGACCTGGTGGTGGAAGATCGGCTCAACTTCTGGGGCACGGTGAAGGACCAGTACGGCGTGGACATGTCCTGCATGTCTGCCTTCGCCCGAAAGTGCATCATGAACTCTGACATCACCGTGAACCTGGTGACGGTGGAAGATGTCCTCTCCCACCCGGCCAAGTTCGCCGAGCTGGACCTGCACACGGTGACCGCGGAGCAGCTCCAGAGCCTGAGAGGCCGCTTCGGCTGCGAGTGCTTCGGCTCCTCCTGCGTCAATGCGCTGTGCGTCTGGTTCTCCGTGACTTTCCCCGGGGAGGAGAAGCCCCTGGTCCTCTCCACGTCTCCCTTCCAGCAGGAGACGCACTGGAAACAGGCGCTGCTGTACCTGGACGAGGCGGTGGAGGTGAGGCAGGACACCAAGGTCGAGGGGGAGATCACCATGTACCCCTCGGAGGAGAGCGCCAGGCATCTGTGCATCCATGTGGACTATACAATAGGAGAGCACAAAAAGAAATCAAAGACCTTTTTCATGGGAGACGGATACACAGACCCTCAGtga

Function

symbol description
prmt6 Predicted to enable histone binding activity and protein-arginine N-methyltransferase activity. Acts upstream of or within several processes, including glial cell development; histone H3-R2 methylation; and negative regulation of macromolecule metabolic process. Located in chromatin. Orthologous to human PRMT6 (protein arginine methyltransferase 6).

NR:

description
PREDICTED: protein arginine N-methyltransferase 6

GO:

id name namespace
GO:0034970 histone H3-R2 methylation biological_process
GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0043985 histone H4-R3 methylation biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0035241 protein-arginine omega-N monomethyltransferase activity molecular_function
GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity molecular_function
GO:0070611 histone methyltransferase activity (H3-R2 specific) molecular_function
GO:0070612 histone methyltransferase activity (H2A-R3 specific) molecular_function
GO:0044020 histone methyltransferase activity (H4-R3 specific) molecular_function

KEGG:

id description
K11437 PRMT6; type I protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005130 True 1047 mRNA 0.60 1 16648880 16649926

Neighbor

gene id symbol gene type direction distance location
AMCG00005127 NA coding upstream 273424 16370663 ~ 16375456 (+)
AMCG00005126 NA coding upstream 283228 16352880 ~ 16365652 (+)
AMCG00005132 NA coding upstream 489922 16106627 ~ 16158958 (+)
AMCG00005131 NA coding upstream 547391 16063952 ~ 16101489 (+)
AMCG00005121 NA coding upstream 605740 16038211 ~ 16043140 (+)
AMCG00005137 NA coding downstream 18800 16668726 ~ 16690410 (+)
AMCG00005134 ntng1 coding downstream 42971 16692897 ~ 16745646 (+)
AMCG00005135 NA coding downstream 100775 16750701 ~ 16758234 (+)
AMCG00005138 NA coding downstream 206459 16856385 ~ 16861576 (+)
AMCG00005146 fam102bb,fam102b,LOC107698400,LOC107555630,LOC107696175 coding downstream 240501 16890427 ~ 16903809 (+)
G145630 NA non-coding upstream 417027 16229288 ~ 16231853 (+)
G145593 NA non-coding upstream 601686 16036612 ~ 16047194 (+)
G145577 NA non-coding upstream 694202 15953615 ~ 15954678 (+)
G145435 NA non-coding upstream 1391217 15255889 ~ 15257663 (+)
G145418 LOC106560501 non-coding upstream 1404634 15242385 ~ 15244246 (+)
G145731 NA non-coding downstream 264089 16914015 ~ 16914225 (+)
G145744 NA non-coding downstream 286901 16936827 ~ 16937075 (+)
G145782 NA non-coding downstream 363551 17013477 ~ 17013714 (+)
G145783 NA non-coding downstream 368042 17017968 ~ 17018375 (+)
G145785 NA non-coding downstream 381710 17031636 ~ 17031863 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 1264069 15379599 ~ 15384811 (+)
AMCG00005060 LOC106599426 other upstream 2460551 14155155 ~ 14188329 (+)
G144940 NA other upstream 3867710 12780580 ~ 12781170 (+)
G144677 NA other upstream 4985512 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 6633456 9948410 ~ 10015424 (+)
G145932 NA other downstream 1115331 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 2165103 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 2825213 19475139 ~ 19530453 (+)
G146305 NA other downstream 2929647 19579573 ~ 19579807 (+)
G146519 NA other downstream 3532428 20182354 ~ 20184643 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_01672709_01673776 PRMT6 coding CI01000082 null 1672476 ~ 1674115 (+)