AMCG00005121


Basic Information

Item Value
gene id AMCG00005121
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16038211 ~ 16043140 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005121
TTTTGAAGAGCAGCCCCTGCTTTAAAGGAGGAGTGGTTAGCAGAGCGCTTCAGTCACAGCCAGCCGCCGGGAAGGACGGGATTCATCTCATAAGACAACGAGCAGCAGTTATTGTGTGGCTTCTGCTGGAAATAGTTTTCTCTCTCCTGGTATTTGGATAAATCGCATCCTATCTAGAAATGCGCGCCTTGTTTGGACTTGGATCTTTTCTGGGTTTCTGTTCACTCTTTCTTCATGATGTCTCAGGTAATGATATTTATCCCACGGCACAAAACGTGTCCTGGTCTTCCCACAATTTTAAGACCCTCCTTACCTGGAGCCCCGAACCCACCGGCTACTCTTACACCGTTGAGTATTCTGTATTAGGGAAAGACCACAAGAAAAACCCACACTGCATACGTACAACACAGACCGAATGTGATCTGACCATGGACCTGACTGAGCTGAACCAGACTTATTCTGCTGATGTGGTTTCTGAGCCAAAACTGGGCGACCCTTTAGATGTGGAGGAGTACCCCTACACCAAGTCAGAGCGATTCTGCCCGTACAAAGACAcAACAATTGGGAAACcaaattttacatttgaagTGAATGAATCGAAAAACAAGATTACACTACATATACAGGATCCCGTTTCTGCTATTCGAGGAGCAAACAACGAATTACTGAAAATGCGAGAAATCTTCAAAGAAGAACTGAAATACAAAGTGTTTTACAGCAAAGCTAAAACATTAAGCACCAATATTGTTATTAACGTGAAATGGGACATCATCTTTGAACATGACTTATTGTGTTtccagaaagaaaaagtaacaaTGACGAATGAGATTGAATTGGATGTGGATAAAGGACAGAGTTACTGCTTCAGTGTTCAAGCTTATATCCCAACCCGGGCCATCAATAAGCAGCTCGGCGAACTTAGCAAAACCCAGTGCTCCCCTGAAGAGAAGTCAAACATTTTTGAAGagtaTGGACTCGGTGTGATTGCTGGGGGCATCATTATActgataattattttactttccatTATCTGTCTGATTACATACTTTTGCAAACGAAGAGCCAAGGCAATACACAAGGAAGCCATGCCTTTAAATGCTGTCTAATGAAAAAGCCAAGCACTGCGTCAAAAGGGTCAGCCATGATCCATTCAAAACATATGGAGCTCCACTAAGAGAAGTCTAGGGTACGTTTTACAAAAGTCGTATTTTAATCACTGGAATATATTATTTGGTTTCTGTGAAactaaaaaaagtgtttgatatGGTGCACATATCTTTTCTTTTAGTAATTGTTCAAGACCGTTTTATTTAGTTAGGGACTATAATACATTTCTACACCCTGATGGTGGTTGGTActtttacatcaaagtgacagatTACTGCGATAGTGAATGTAAACACTAATTTTATACTGATTTATTCTGTGTAACTTTCCTTATTTCATTGCTGATACAACACTACATAATTTATGGGAACTTTGGAATCCTAAATCTACTGTAACTGATTAATATGCtgtatttataaatggtttaatggggattttatttatgtgtggttaaaaataatgtattattttgtatatttggtGTTATTATcttaagtatttatatattttttttaaaataaaatgtctgtggGATCAAAATATAGGTTTTTTTACAATAGTAACATAATGAAAACGTTATTTCAAATTGACAATTACgtccatttaaaataagtttcagTATAGGAGTATAGCTATATAGGAAAATGTTTATGTTATGAAGAACATATTGGGCAAGTGGGAAAGATTGTGAGaaattgaatacaatttaaCTTCTCGTATAAATGGAACTCACTAAAGATATGTTGATGTTAAATAAGGAAATGTCTCATTGTAGTGTTTTCTTTAAGTTTGATACGGTTGATACTGTTACTGCAAATGAAAGAATCAATTGTAGAGGaccagaaatgttttaatatgaactatttcaataaataaaaaggtttgtAACAGGgtaaatggttttcattttgttttctttttgtgcacttttacagttttaaataaaagtaaaaacatctGCTCTGTCTGATTTCATCTCATTTTCtgccttaataataataatgtttacttCCCCTGCTGTCCAACAGTTCTTAGATCATTTACATTTGTCTCGCTCAATTTCCTTTGTGTTATGCTGTCAGAATAACAACATGCTTGTTTTTAAGTAGGAACACTGATATATAATGAATATCTGCATACAGGTGCAAATAGGTTCAAaagattaaagcaaaaacagatGTAAAGTATAAAATACTGCCCTTGGGACTGGGAAGTTGTCCagggttttattgttttagataCATGTGCAGTACTCATCCTGGGAAGTACTGGAGCAGCTTAGCATTAACCTTgccttcaaataaaaaacattggtGGCTCAATATTGCCCTCTAGGGTTATTGTCCAATAATAAGCATTAGCATAAATAGGTTTGCTTTGCCATTGTGGaccaagatatatatattatatatattaaagctgATAATTAGATCAGTTCTCAAAGGAAATACataccagatttttttttt

Function

GO:      GO:0044699

KEGG:

id description
K03901 F3, CD142; coagulation factor III (tissue factor)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005121 True 2576 mRNA 0.36 6 16038211 16043140

Neighbor

gene id symbol gene type direction distance location
AMCG00005122 cnn3,LOC108269615,LOC107739018,LOC108428967 coding upstream 31382 15993366 ~ 16006829 (+)
AMCG00005120 NA coding upstream 46833 15979839 ~ 15991378 (+)
AMCG00005116 NA coding upstream 282793 15753182 ~ 15755418 (+)
AMCG00005117 dpyd,LOC107590279,LOC107677268,LOC106568897,LOC106578501 coding upstream 357483 15662094 ~ 15680728 (+)
AMCG00005118 dpyd,dpydb,LOC106578501 coding upstream 376123 15642669 ~ 15662088 (+)
AMCG00005131 NA coding downstream 20812 16063952 ~ 16101489 (+)
AMCG00005132 NA coding downstream 63487 16106627 ~ 16158958 (+)
AMCG00005126 NA coding downstream 309740 16352880 ~ 16365652 (+)
AMCG00005127 NA coding downstream 327523 16370663 ~ 16375456 (+)
AMCG00005130 prmt6 coding downstream 605740 16648880 ~ 16649926 (+)
G145577 NA non-coding upstream 83533 15953615 ~ 15954678 (+)
G145435 NA non-coding upstream 780548 15255889 ~ 15257663 (+)
G145418 LOC106560501 non-coding upstream 793965 15242385 ~ 15244246 (+)
G145398 NA non-coding upstream 885472 15142484 ~ 15152739 (+)
G145379 NA non-coding upstream 909640 15126586 ~ 15128571 (+)
G145630 NA non-coding downstream 186148 16229288 ~ 16231853 (+)
G145731 NA non-coding downstream 870875 16914015 ~ 16914225 (+)
G145744 NA non-coding downstream 893687 16936827 ~ 16937075 (+)
G145782 NA non-coding downstream 970337 17013477 ~ 17013714 (+)
G145783 NA non-coding downstream 974828 17017968 ~ 17018375 (+)
AMCG00005105 LOC102220226,LOC108442892 other upstream 653400 15379599 ~ 15384811 (+)
AMCG00005060 LOC106599426 other upstream 1849882 14155155 ~ 14188329 (+)
G144940 NA other upstream 3257041 12780580 ~ 12781170 (+)
G144677 NA other upstream 4374843 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 6022787 9948410 ~ 10015424 (+)
G145932 NA other downstream 1722117 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 2771889 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 3431999 19475139 ~ 19530453 (+)
G146305 NA other downstream 3536433 19579573 ~ 19579807 (+)
G146519 NA other downstream 4139214 20182354 ~ 20184643 (+)

Expression


Co-expression Network