G145435


Basic Information

Item Value
gene id G145435
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15255889 ~ 15257663 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182931
GTCTGGGTGAGGTGGAAGAGAAGGTCCGAGATCACATTGAGGATAAATTCCTCACTTCAGCCCAGCCTGCCACGTTTAATCAAATGGATCCTGATAAGTGGAGTGGACTTTGGAGTCGGATCTCGCACTTGATTCTACCCGTTACTGCTGTGAAGAGCCATGAAGAGCTAGGCTGTGATTCATCATGAGATATACCAGCAGCAGTAAATCATTAATGTGGGGGTGTCGGACATGAACTTTACTATAGCTCAGGAATATACAACTTTGTCTTTACCGGCGTTTTCCCTTGCAGGcctttatttttgctttcataTAATATACTATCATTCTGAGCAATGTCATTTAAACTTACTTGCTTCTAAAAAAGATATAGAGCAGAGAGAATCCCATGTTCTGTAGTGGATTACATTGGAAAGACGAGGGCTGgaatgaaatcaaaacattggCCATCCTGCTAATGgaaaactacaagcctgtactaTAGTGGTGGcttcattttgtattctaatcataaatgtaattgctatgatgtacaggtgtgtagtttTCTCTTGGCTtctgggtcaaagttttcatttttatcctTCCCAAGATTGATTTTTGCATTAACTCTCAATAAATCACTTGGTAACGATTTATTTGCACTTTAAAGATGCCTTGAAATGTTTCTGTGGAAGAACTTACATTGTGAAAAAGTGTGGGTATCTGTTCAAATTAATAGTAATGCAATTCTGAGCAAATGTATGAATATCAATGCCAGTGCGTGCTGTATTATACTGATTTTAAGATCAACTTCATATATCTccaagaatatttttttaagtacagtattttaattatgtatgatatcttgtgaaattaaatgcatacttCGGAAGaacatgaaaatcaataatGAATTTGGATGATAATTGATTAGAAGAGCCATATCTTATTGTGTCTTACATAGATTTGGACTATAGAATTTGACTTGATGTGCTCAGCTGTTTAAACTCACTCTGTGGATGCTGCTGGTTTCAATATATTATCTGAATCACAGTGAACCAGTTATCTTCCTTCCCTAACCTGAACCTTTATTATTCAGAGTCCCAGTACATCTGActttaatttctgaaaacaagaccTGACTGTCACTGAAGGATGCTGGTTAAGTGCCAGCAACAATGAACAGGAATTGAGTTGCAAAGATGGTAACCCCTAAAAGGTTTACTgaaacatttgtcattttaatatttctgtaaagACAAAGTATCCAACAGATGAATCTTGAGTAGCCTGATAAACACACCAAGCTTTTGAGTTTAGTcaaggaataaaacatttaaatggatgAGTTGTGAAAGTAGTGCAATGTTATTAATGCCAACTTCTGGAAATAACATGGGGCTATATCAAAAAATGTAGGCAATTTAACATCATGTAGCTACCTATATGTAGAGATGTGTATACAAATAAGTGTGATTAAAATCTACATTCATGAAGCAGGTTGAAAAATACTTCATTCCCAAATGTAAATGAAGGATGTGTCAAAACCATTTTCAATGTGTACCATATGGAGGTACAAGTGGAAGTGTCTTCCTTTCAGTCTTGCACTTCGATTTCAAGATCTTCCATAGTTTGTTGAGCTCCATCCCAATCGCTACAATCCTTTCCATTGTCTTTAAATTGGGATTACTCTTCAAGACGACAGCTGGACACGATCAAAGGGATATTTAtctataacaatattttatcgTTTTTTATATGAAGAATTAAGATGATGTgccttcaattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182931 True 1775 lncRNA 0.36 1 15255889 15257663

Neighbor

gene id symbol gene type direction distance location
AMCG00005090 NA coding upstream 13690 15200846 ~ 15242199 (+)
AMCG00005091 NA coding upstream 55759 15197034 ~ 15200130 (+)
AMCG00005085 NA coding upstream 105499 15131732 ~ 15150390 (+)
AMCG00005086 NA coding upstream 144623 15108883 ~ 15111266 (+)
AMCG00005084 LOC104956565 coding upstream 163425 15086784 ~ 15092464 (+)
AMCG00005104 NA coding downstream 734 15258397 ~ 15284450 (+)
AMCG00005103 NA coding downstream 51427 15309090 ~ 15309877 (+)
AMCG00005102 NA coding downstream 79605 15337268 ~ 15347378 (+)
AMCG00005110 plppr5,LOC107739033,LOC107657749,LOC107677304,LOC107712819,LOC106578506 coding downstream 207420 15465083 ~ 15492249 (+)
AMCG00005119 NA coding downstream 360948 15618611 ~ 15627259 (+)
G145418 LOC106560501 non-coding upstream 11643 15242385 ~ 15244246 (+)
G145398 NA non-coding upstream 103150 15142484 ~ 15152739 (+)
G145379 NA non-coding upstream 127318 15126586 ~ 15128571 (+)
G145369 NA non-coding upstream 158877 15094969 ~ 15097012 (+)
G145307 NA non-coding upstream 280503 14973110 ~ 14975386 (+)
G145577 NA non-coding downstream 695952 15953615 ~ 15954678 (+)
G145593 NA non-coding downstream 778949 16036612 ~ 16047194 (+)
G145630 NA non-coding downstream 971625 16229288 ~ 16231853 (+)
G145731 NA non-coding downstream 1656352 16914015 ~ 16914225 (+)
G145744 NA non-coding downstream 1679164 16936827 ~ 16937075 (+)
AMCG00005060 LOC106599426 other upstream 1067560 14155155 ~ 14188329 (+)
G144940 NA other upstream 2474719 12780580 ~ 12781170 (+)
G144677 NA other upstream 3592521 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 5240465 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 5505112 9700167 ~ 9750777 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 121936 15379599 ~ 15384811 (+)
G145932 NA other downstream 2507594 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 3557366 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 4217476 19475139 ~ 19530453 (+)
G146305 NA other downstream 4321910 19579573 ~ 19579807 (+)

Expression


Co-expression Network