G145398


Basic Information

Item Value
gene id G145398
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15142484 ~ 15152739 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182891
taataataataataataataataataataataataataataataataataataataggaattgCTCTCTTCTTATTTGGAAAGAAATTGAGTACAGCACAAGCTTGTGATAACTAAATGCTTGCTTACTGCTTTACAAGATTACCTATTAAATGCATTGTATGGGGTAAAAATATTCATAAGTATCTGgctaataatgtttaattacgAAAATATCCTGTTGGGAGTCTTTTACAAAATAGCCTCATCTGTCTGCGCTCTGAATCAGCGTGATGCcaattataacatttataagGCAGAGGGTTTGTGGTCAATCGCTGGCACAGACAACCACAATAAATAACTGATCAACAGAGGGACTGCTGTTCAGTTATTTGCAGAAGAATAATTAGTTTATTGCTACCTGGGGTTTGAGTGTGCTGTCAGGAGTTTACTACAACTTTTATGTTCCATTCTGCTATGGTGTATCACTCATAAAATGCACTGAGTTGCCCCTCTTTAACCAGCTTGAAGGAACATCTTTTTATAAACTTTATAAATAGGTGTACTCCTTTACAATTACAGTAGATTTGGGATTTTCAGTCTCATGTAACCTTTAAAGTGTTTCAGTGATTCTCTTTATGACAGACATGGGACAACAAAGCATATTGTGAACCGTTTTTGGGTGTTTCTTTGTAATGAAGACATGTTTTCCCGAAAACTGAGCAGAACAGACTGATGTGTTTCAATGATTGTGCCAGTTTCTGTCCTCTTCATCTCTTTGACATTATTTTGCTGTCAAGTACATCTTGCTGTGaacataattttatttctgcaaagtTAAAAATTGCCACTCCCCCGACCATCATCCATGTGAACAACATCAGAACTCTAAGGAAGTGCATATCATagtatatgtttaatttaattatatgacAATGTTATGTCCTTCGCAAggtgttttattgaaataactgtgaatacattatttggaagtgtgaatatatatgtttttgttagaTATATTTTCCTGCACAGATTTTCAATGTAGAAACCAATGGTTCATACCAATGTCACTTTGTTAGTactattattgattttaatcaaatgcaaaCTAAGGGctttattaaatcaaaagttcACAATGGTTCTAATAGTTAGGATGGTGCAATACATCTGATTCATGGATTTTTGATGGCATTATAAcatgtttaagaaaatatattataaatgctctttgtatatacatatcatgtcttgaataaaataaaattaaaacttgttTAGGTAAACAAAATTATTTCCATCTGGATAACAAGATATACATTCCAGTatttgatgtgtgtttttttgataCTATCTGCATATGCTTTTGTTCAACTCAAATTGGAAACGTAACATTAAAATTCAAACTGGATTTTGTTTCCTGATGCATCTGCTCTAGaactactgtactgtaacactTGGGGAATGTGGACAATTGTGACAGACAGTTAAATTGTTCCTGACTAATGAATTGCGATCTGATTTTCAAGCTCTGATTTCATGGAAGGAAACTTGAGAGGAAACAGAAAGTTCATAGCCAGGGCAAAGAGGTAAAACTGATAAAGAGGGGAAAATGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182891 True 1602 lncRNA 0.32 2 15142484 15152739

Neighbor

gene id symbol gene type direction distance location
AMCG00005086 NA coding upstream 31218 15108883 ~ 15111266 (+)
AMCG00005084 LOC104956565 coding upstream 50020 15086784 ~ 15092464 (+)
AMCG00005096 NA coding upstream 64315 15057323 ~ 15078169 (+)
AMCG00005094 NA coding upstream 101219 15038438 ~ 15041265 (+)
AMCG00005095 ptgs2,LOC108442416 coding upstream 139377 14998337 ~ 15003107 (+)
AMCG00005091 NA coding downstream 44295 15197034 ~ 15200130 (+)
AMCG00005090 NA coding downstream 48107 15200846 ~ 15242199 (+)
AMCG00005104 NA coding downstream 105658 15258397 ~ 15284450 (+)
AMCG00005103 NA coding downstream 156351 15309090 ~ 15309877 (+)
AMCG00005102 NA coding downstream 184529 15337268 ~ 15347378 (+)
G145379 NA non-coding upstream 13913 15126586 ~ 15128571 (+)
G145369 NA non-coding upstream 45472 15094969 ~ 15097012 (+)
G145307 NA non-coding upstream 167098 14973110 ~ 14975386 (+)
G145278 NA non-coding upstream 281328 14838584 ~ 14861156 (+)
G145281 NA non-coding upstream 289743 14846088 ~ 14852741 (+)
G145418 LOC106560501 non-coding downstream 89646 15242385 ~ 15244246 (+)
G145435 NA non-coding downstream 103150 15255889 ~ 15257663 (+)
G145577 NA non-coding downstream 800876 15953615 ~ 15954678 (+)
G145593 NA non-coding downstream 883873 16036612 ~ 16047194 (+)
G145630 NA non-coding downstream 1076549 16229288 ~ 16231853 (+)
AMCG00005060 LOC106599426 other upstream 954155 14155155 ~ 14188329 (+)
G144940 NA other upstream 2361314 12780580 ~ 12781170 (+)
G144677 NA other upstream 3479116 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 5127060 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 5391707 9700167 ~ 9750777 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 226860 15379599 ~ 15384811 (+)
G145932 NA other downstream 2612518 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 3662290 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 4322400 19475139 ~ 19530453 (+)
G146305 NA other downstream 4426834 19579573 ~ 19579807 (+)

Expression


Co-expression Network