AMCG00005094


Basic Information

Item Value
gene id AMCG00005094
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15038438 ~ 15041265 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005094
ATGTCCGGCCACAGTGTGGATGAGGATTTGGAGGAGCTTCCGGCAACAAAAACAGGACCCAAGGGCGTAATCAATGACTGGAGAAAGTTCAAACTGGAAAGCGAGGACCATGAGTCCATTCCCCCCAGCAAGCGGGAACTGCTCCGACAGATGTCTTCCCCGCACAAACCAGGCCGAGAGGATGAAACCCGAGAGAAACTCAACCGAAAGATGAGTGTGCAGGAGTATGAATTGATTCAGGACGAGGATGAAAGCTGTCTCCGCAAGTACCGCAAGCAGTGCATGCAAGAGATGCACCAGAGGCTGAGCTTTGGGCCCAAGTTCGGCTGCCTGTACGAGCTGGAGAGCGGGGAGCAGTTCCTGGAAACCATCGAGAGAGAGCACAGGCTGACATTTGTGGTGGTGCACATCTATGATGATGAAGTCAAGGGCTGCGATGCTTTGAACAATTGTCTGACCTGCCTGGCTGCAGAATACCCCAGCGTCAAGTTCTGCAAGATCAAGGCCTGCAACACCGGGGCAGGTGACCGCTTTTCTGACAGTGTACTGCCCACGATGCTAGTGTACAAGGGAGGGGAGCTTGTGGGCAACTTCCTGTGCATCACAAAGCACCTGAATGAGGAGTTTTTCGCTGTAGATGTGGAAGCCTTCTTGAATGAATATGGTTTGCTGCCAGAGAAGGAGTTTGGAGCCTGCCAGAATGAGGAAGAAGAAGCAGATGTTGAATGa

Function

GO: NA

KEGG:

id description
K08327 PDC; phosducin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005094 True 729 mRNA 0.52 3 15038438 15041265

Neighbor

gene id symbol gene type direction distance location
AMCG00005095 ptgs2,LOC108442416 coding upstream 35331 14998337 ~ 15003107 (+)
AMCG00005097 NA coding upstream 74054 14901810 ~ 14964384 (+)
AMCG00005078 NA coding upstream 201955 14813861 ~ 14836483 (+)
AMCG00005079 rnf2,LOC107677769,LOC107718134,LOC107693737 coding upstream 232534 14800105 ~ 14805904 (+)
AMCG00005080 NA coding upstream 267041 14745805 ~ 14771397 (+)
AMCG00005096 NA coding downstream 16058 15057323 ~ 15078169 (+)
AMCG00005084 LOC104956565 coding downstream 45519 15086784 ~ 15092464 (+)
AMCG00005086 NA coding downstream 67618 15108883 ~ 15111266 (+)
AMCG00005085 NA coding downstream 90467 15131732 ~ 15150390 (+)
AMCG00005091 NA coding downstream 155769 15197034 ~ 15200130 (+)
G145307 NA non-coding upstream 63052 14973110 ~ 14975386 (+)
G145278 NA non-coding upstream 177282 14838584 ~ 14861156 (+)
G145281 NA non-coding upstream 185697 14846088 ~ 14852741 (+)
G145268 NA non-coding upstream 247311 14778238 ~ 14791127 (+)
G145251 NA non-coding upstream 360841 14676709 ~ 14677597 (+)
G145369 NA non-coding downstream 53704 15094969 ~ 15097012 (+)
G145379 NA non-coding downstream 85321 15126586 ~ 15128571 (+)
G145398 NA non-coding downstream 101219 15142484 ~ 15152739 (+)
G145418 LOC106560501 non-coding downstream 201120 15242385 ~ 15244246 (+)
G145435 NA non-coding downstream 214624 15255889 ~ 15257663 (+)
AMCG00005060 LOC106599426 other upstream 850109 14155155 ~ 14188329 (+)
G144940 NA other upstream 2257268 12780580 ~ 12781170 (+)
G144677 NA other upstream 3375070 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 5023014 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 5287661 9700167 ~ 9750777 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 338334 15379599 ~ 15384811 (+)
G145932 NA other downstream 2723992 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 3773764 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 4433874 19475139 ~ 19530453 (+)
G146305 NA other downstream 4538308 19579573 ~ 19579807 (+)

Expression


Co-expression Network