G145278


Basic Information

Item Value
gene id G145278
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14838584 ~ 14861156 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182742
GTTGAAATGGTTTATTAGTTAAGAAATATTAGCTCATCAGATTGTAACAAAAGATCTAGAATTTCACATCCTCCAATTCCttctaaaaaaactaaatcttgaaatactgaacacaaacatactttaaacattcagaaatgccatttcaaatcaaaataataaatctgtaaaattgCAGTACCAAAGTGGTCTTTGCAGAGGCAGAAGCAAGAGCTCTGAAGCATGGTTGTGTAAGTGTTTGGGTGATGAAACCACCTCCCTCTGGCACAGTTTCATTTAATgcttcaaacaaaaaacaaaaagtcttgTATCTGCCATTTTACAGGTTGGTAAATTGCTCAGcagtgtataaaaatataaaaaaggccATCAAAAGATACCATTGTTTTGATAAGTAACTCTGCTTTCAtttaaatgacacaaaacagccATATTTGCATGTAATCTTTCTTTGAATAAGGCTTTGAAATGCAGATCTTCCCCATTAGCTAAAACTAAAGCACAACATATGTAATTTGGAAATAGTCCTTTACATGTACTTGCCCAAAACTCAGTCATTTCTTTGTTCTAAATAGGACTATCCCACACTAGCCATCATTGTGCCAAACCATaagatggggaaagtgatAATGATGTCTTGCAGTTGATTATTATAAAAGGAAGTCTAAGCAACgaaaaataaccaaaatgtgaaatacatttaaaaaagaaatcactgactaaaaaaacttaaatttgATGTGTGTCACTGTAGCTCCACCAAGGTCAGTATATTAAAAGCCATTAGTGTGAAATCATGTTGAAGTCAGGAAGCACCTGTGCTGTGTTtgattgatatttttttctgtgcattgtTATGTAGATTATGACCTTGGCCCTGTCCTTATAAACGCCTCAATATATCACAGGTCACCTGTTTTTTGACCTGgaaatagcaattaaaaaacacattccgTTCTCAGTAAGGTATCTTGTGGAGATTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182742 True 986 lncRNA 0.34 2 14838584 14861156

Neighbor

gene id symbol gene type direction distance location
AMCG00005078 NA coding upstream 2101 14813861 ~ 14836483 (+)
AMCG00005079 rnf2,LOC107677769,LOC107718134,LOC107693737 coding upstream 32680 14800105 ~ 14805904 (+)
AMCG00005080 NA coding upstream 67187 14745805 ~ 14771397 (+)
AMCG00005068 LOC102781441,LOC101470867,LOC108433095,LOC102203003 coding upstream 269046 14567840 ~ 14569538 (+)
AMCG00005067 NA coding upstream 281475 14553621 ~ 14557109 (+)
AMCG00005097 NA coding downstream 40654 14901810 ~ 14964384 (+)
AMCG00005095 ptgs2,LOC108442416 coding downstream 137181 14998337 ~ 15003107 (+)
AMCG00005094 NA coding downstream 177282 15038438 ~ 15041265 (+)
AMCG00005096 NA coding downstream 196167 15057323 ~ 15078169 (+)
AMCG00005084 LOC104956565 coding downstream 225628 15086784 ~ 15092464 (+)
G145268 NA non-coding upstream 47457 14778238 ~ 14791127 (+)
G145251 NA non-coding upstream 160987 14676709 ~ 14677597 (+)
G145147 NA non-coding upstream 634072 14204134 ~ 14204512 (+)
G145067 NA non-coding upstream 1265124 13573242 ~ 13573460 (+)
G145039 NA non-coding upstream 1520732 13315378 ~ 13317852 (+)
G145307 NA non-coding downstream 111954 14973110 ~ 14975386 (+)
G145369 NA non-coding downstream 233813 15094969 ~ 15097012 (+)
G145379 NA non-coding downstream 265430 15126586 ~ 15128571 (+)
G145398 NA non-coding downstream 281328 15142484 ~ 15152739 (+)
G145418 LOC106560501 non-coding downstream 381229 15242385 ~ 15244246 (+)
AMCG00005060 LOC106599426 other upstream 650255 14155155 ~ 14188329 (+)
G144940 NA other upstream 2057414 12780580 ~ 12781170 (+)
G144677 NA other upstream 3175216 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 4823160 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 5087807 9700167 ~ 9750777 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 518443 15379599 ~ 15384811 (+)
G145932 NA other downstream 2904101 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 3953873 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 4613983 19475139 ~ 19530453 (+)
G146305 NA other downstream 4718417 19579573 ~ 19579807 (+)

Expression


Co-expression Network