AMCG00005096


Basic Information

Item Value
gene id AMCG00005096
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15057323 ~ 15078169 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005096
GAAGTGCGACTCGGGCCGGCGGTATTTGTTGAAGAGCGGCCGCTCAGTGCGCGGAGGAGAAAGATGGCGGCGGTCCTGCAGCAGATCCTTGAGCGGGCAGAGCTCACTAAACTGCCCAAAGCCGTGCAGAGCAAGCTGGAGAAGGCCCTGTCGGACCAGCAGTGTGAGATCGATGCCCTGAAGTCCAGCCATGAGCGCTTTAAAACAGACAGCGACATCCAGTACTTGGACCTGGAGAAACGGGTGTCACAGAGTCAGGAGAAGCTGGTGTCTGAAACCCAGGAACGCCAAAACCTCCAAGAGGAGCTGAGTAAGCTTAATGAGGAATTGAAGACCCTGAGAGAGAAGAATAAAGAACATGAAACATCTGAAGAAAAACTTTCTGCTCAACTGAGTCAGCTTTCAAGAAGTAAAGATGAGTTGGAGGCTGAAAAGCGAGAACTGGTCCGAACACTTGAGAAAAGATCCCAGGAAGTGGAGCACTTAAGTGAGGACCTGAAGCGTCTCAATGACAAACTGGTGGAGACCAACACAGCCAAGATGGAACTGCAGTTGAAGCTTGATGAGCTCCAGTCTTCAGAGGTTTCAATCAAGTACCGGGAGAAGCGGATGGAGCAAGAGAAGGATCTGCTTCAGAGTCAGAGTACTTGGCTGAATACGGAGCTGAAAAGCAAGACCGATGAGATGCTCTCCATCGCACGAGAGAAAGGCAATGAGATCCTGGAGCTCAAGTGCAACCTGGAGAACAAAAAGGACGAGGTGACAAGACTTCTAGAACAAGTGAGCACCTTAAAGGCCTCTAACGAGAACTTCCAGAAGCTGGCAGAGGACTTGATGAGCAAATTGAAAGAGAGCGCAGCAGCCGATTCAGAATCCAAAAGCGAGGAGCTCAACAGGGCTGTGGAGGAGCTTCACAAGTTACTGAAGGAAGCAGGTGAAGcaAACAAAAGTACAGAGGCCAGGTTACTCGAAGTGGAAAGTGCTAATGAGAAGACCGAAACAGACTTGAGAGAGAAGATCCGAAATCTGGAGAAAGAGCTGGAAAATGCCAATCAACTGCTGTCAGATACCAAACGCAAAGGTGTAGCTGCACTTAGTGAAGAGGAGTTGACCATTCTGTCTCCGACTGCAGCAGCCGTGGCTAAAATAGTGAAGCCTGGGATGAAACTTACTGAGCTCTACAACGCGTATGTTGAAGCACAGGATCAGCTTCAGCTGGAGAAACTGGAGACCAAGCGGGTGAATAAGTACCTGAACGAGATGTTGCAGGAGATGGAGGCCAAGGCGCCTGTTATGAAACGCCAGCAGGATGAGTACGAGCGCATGCAGAAATCGGTCGCAAGTCTCTCTGCGAAACTGGAGCAAACGACAAGGGAAATGCATAGGCTACAGAAAGAAACCGATGAGGCGAACAAGTGCTCCTCTGTGCTGGAGAGGGATAACCAGAGGCATGAGCTGCAGCTCACTGATATGTCACAGCAGATCAGAGTGCTGCTAATtgagctggaggaggccagAGGTAACCATGTAATCCGTGAGGATGAGGAGGTGAGCTCTGCTGACATCAGCAGTTCCTCCGAGGTCATATCCCAGCGACTGGTGACCTTCCGTAACATCgaggagctgcagcagcagaACCAGCGTCTCCTGTTGGCTTTGCGGGAGCTGGGAGAGGCCCGGGAGAAGGAGGAGATGGAAACCACTTCTTCAAGGGTAACAGAACTGGAACTGAGTTTAGACAAGGCGCAGAGTGAGTTGGACCAACTACGGGAAGCCCGCAGCCACCAGATGCACTTAGTAGAGTCCATTGTGCGTCAACGAGACATGTATCGCATCTTGCTCGCACAGACAACTGGAGTGACTTTCCCTGTCCAAGTTCTCACTCAAGAGGAGTTCTCTCTGACGTCCACCCCGCGCCGCTCCCCGGCCATCACTCCCACCGTGTCCACTCCTGCCCAGGCCACTGCAGCTGAGTCTACAGAGGCACTTCAAGAGGTGTTCACAACATACAAGAAGGAGAAAGCTGAAAATGACAAGATGCTTAATGAACAGAATGAAAAGTTACAGGAGCAAGTGTCTGAAGTTCGTTCCCAGAATGCCAAGATCTCCACCCAGCTGGAATTTGCCTCGAAGCGgtATGAAATGCTGCAGGACAATGTGGATGGATATCGCCGTGAGATCGCCTCCCTGCGGGACAAGTGTCAGAAGATGATGACTACCACCCAGAAGCAAGAGCAGATAATCCACACCATGACACAGGATTTGAGAGGTGTCAATGAGAagctggctgtagcagaaGTCCGAAATGAAAACCTGAGGAAGGAGCGAGACATGCTGAAGATTGTGGAGTCCAGGCTGAACCAGGAAAGGGAGTCTATTCTTGCTGAGCAACGAGGACAGAATCTCCTACTGACTAACCTGAAGTCAATTCAGTTGACACTGGAGCGCTCAGAGACAGAGACCAAACAGCGTCTCAATAACCAGATTGAGAAACAGGAACGGGAGATCTCCCAGCTGAAGAAAAAACTGGAACATGAGGTGGAGCAGAGACACTTACTGGGCAGAAACCAAGATctgcagttgctgGAAGCCAAGAAACAGCTGGAGACCCAGAACTCCATGCAACTGAAAACCAAGGAGCTTCTGAAGAACGCTGAGCAGGAGATCAGTACTTTGAGACAGCAGCTCAGCAATATGGAAGCCCAGCTGGCCTCGCAGGCAACCAAGCGCTCAGGTGAGAGTGGTTCAGAGCGTGATGCTGAAGAACTGCGTTCAAGCCTCAAAAAGACAGAGGAGCAGAACGGAGACCTGAGAGAGCGCCTGAAAAATGCCACCAGTAACGTGGAGCAGTACAGGGCCATGGTGCTCAGCCTGGAGGAGTCCCTGAACAAGGAGAAACAGGTGACCGAAGAGGCTCGCTCCACCATCGAAGCCCATCTGAAAGAGGCCCAGGAGTACCATGTGCAGCTGGAGAAGAAGCTGGTGGAGGCTGAGAAAGAGAAGCAGGACCTGCAGGAAGAGAAGCGCAAGGCCATTGAGAATCTGGACCAGCAGATGAATGAGCTGAAGAAGAACCTCAGCAATATCCAGGCCGAGCTCCAGGACGCCCTTCAGAGAGCAGCTCTAGCAGCATCTAATGAGCAACAGGCTACCCAAGACAGCCAGCAACAGGCCAAACTGGCGGCTGAGGCCCAGAACAAGTACGAACGGGAGCTGATGCTGCATGCGGCCGATGTGGAGGCGCTACAGGCAGCCAAGGCCCAGGTGGCCCAGACCTCTCAGATGAGgcagcagctggaggagagGGCACAGAAAGCCAGTGCCCAGTTGCTGGAGGCGAAGGTCTCTTGGGAGGAGCAAGAGAGGATGCTGAAGGATGAGTTATCCAAGCTGGTGTCCCGTTCTGAAGATCTCCAGAAACAGAACAGCCTGCTGCATGAGCAGATTGAAAGCATCGGCAACAAGATGGTGGCGTCTGTACAGCAGGCGGCCCAGGACAGCCAACTGAACATGTCCCTCGGCGAGGAGGGCAAGTCCCACGAGCAGATCCTGGAGATCCTCAGgtTTGTGCGGCGAGAGAAGGAGATTGCCGAGACCAGATTTGAAGTGGCCCAGGTGGAGAGCCTGCGCTACCGGCAGCGAGTCGAGCACCTGGAGAGGGAGCTCAAGGAACTGCAGGACAGTCTCAATGCCGAGCGGGAGAAAGTGCAGGTAACGGCTAAAACGCTAGCACAGCACGAGGAACTCATGAAGAAGACCGAGACGATGAATGTCCTTGTGGAGACCAACAAAATGCTtcgtgaggagagagagagactggaacAGGAGCTCCAGCAGACGCAGGCCAAGGTGCGAAAGCTTGAGGCGGACATCATGCCTCTGCAGGAATCGAATGCTGAGCTGAGTGAGAAGAGCGGCATGCTCCAGGCTGAGAAGAAGCTACTGGAGGAGGACATCAAGCGATGGAAAGCTCGCACCCAGCATTTGGTGAGCCAGCAAAAGGACACTGATCCTGAAGAGTACAAGAAACTCCACTCGGAGAAGGAAGCCCATCTGAAGCGCATTCAGCAGCTGTCTGAAGAGACAGGCAAGCTCAAGACTGAGATTGCGAGAACACACGCTTCCTTGACGACATCACAGAACCAAGTGCACAGTCTGAGAGAGAATCTGGGCAAGGTGACCGCAGATAAGGAGTCCATTAAGAAGGAGCTAGAGGCCAAGGTGTTGGACATTCAGGAGAAACTTAAGACTATTACCCAGGTGAAGAAGATTGGTCGCAGATACAAGACTCAATATGAAGAGCTCAAAGTGCAGCATGATAAGCTGGTCACTGAAGCTGCCACCAAACCAATTCTGGAACAGGAGGCCCAGCAGGCTTCAGCCCAGGAAATCCAGGCCCTGAAAGACTCTTTGAGCCAAGCGGAGAACAAGGCCAAGGAACTGGAGGGGCAGGTTGAGAGTCTGCAGAAGTTGGCGAGCGAGCGAGAGGCCGAGGTGAAGAGTGTCCAGGAGCAGGTAAACAAGTTGCAGCCCGAGCTGGCCCGCCTCAaacaggagctgcaggagaaaTGCTCTCAGGAGGAGCAGCTCCGGCAGCAGATAACGGAGAAAGAGGAGAAGACCAAGAAAGCCTTCATGGGGGCCAAACAGAAAATCAACCAGCTCATCGGTGTCAAGGAGCAGCTGACCAAGGAGATCGAGGAGCTGAAGCAGCAGAGGGAGGAGCAGGAGGTGCGCATGAGCGCCCTGAAGTCTCAGTACGAGGGCCGCATATGCCGGCAGGAGAGGGAGCTGCGAGAACTGCGGGAGCAGCAGGAGAGGCACAACGAGCAGAGAGACGAGCCCCAGGAGCCGCCCAGCAAGGCCCAAGAGCAGCAGAGACCAGCCGAACAGAGACAGATCACACTGAAGCCGACACCAGCGGCCGAAAGGGGAAGCGCTAGCACTTCAGAGCCTCCAACGGCCAACATAAAGCCCACCCCCCTCGTCGCAACACCCAGCAAAACCACAGCCATTCCTGGCAACAAGTCTACGCCAAGAGCCAGCATCCGGCCCATGATCACCCCTGCTACGgtcaccacccccaccaccacacccACGGCCACAGTCATGCCCACCACTCAGGTGGAGACGCAGGAAGCGATGCAGTCCTCCGAAGTGCCCGTGGAGCACGTGACTGTCTTTGGCAGCGCCAGTGGGTCCGTTCGCTCCACCAGTCCCAACGTCCAGACCACTCTTTCCCAGCCCATCCTCacagtccagcagcagcagcagacgaCCCAGGCCACCGCGTTCGTGCAGCCCACTCAGCAGAGCGTCCCACCAGTGGAGCCAGCCAGTCAGGAACCAGCGCCCCCCATGGTGGAAGCCGTGCCCAGCGCCCCGACGGAGAGGCCTTCCACCTCCACAGCTGTCTTCGGCACAGTTTCAGCTACACCTGGCACTTCCATACCCAAGAGGCCCcgtgaagaggaggaggagagtgcTCCGGACAACACCGAGGGGCTGCAGGAAGACCCTGCGGATCCACCCATTCCAAAGAAGCTGCGGATCATCCAAAGAGTCGGCCCGGAGGAAGAAGTTGTGGTAGAAGAAAGTACTGACACTGAAGTGGAGGCTCCAGCAGAGAGTCAGGAATCCCAGGATCCCAGCCAGGTGTCTGTGGACGAGGAATACCCCGTGTTAGAGGACAGTGAGTCGATGGCCCAGTCCGTTCCCCTGGAGCTGGTCGCTCAGCCCCCAGAGTCGCAGCTCGGCCCGCAGGACTCCTTGGAGGAGCAGCACGATGTCATCGTCATCGACACCGACAGTgacagtgaggaggaggaggagaacgaAGAGGAAGGAGAGCAGGAgtatgaggaggaggaggaggaagaggatgatGAAGATGGGGACACGGGTATGGGCGATGAAGGAGAGGAGAGCAATGAGGGCAGTGGCAGCGCTGATGGCGATGAGCCGTATGAAGGAGACGACACTGAGGGAGCCGAAGCGACGGACCCCGGCACTGAGACTGAGGAGAGTCTGGGAGCAGCGGAGACCAGCCAGAGAGTGGTTGATTCTCAGAACAGTGGTgaaggcagcagcagcaccacggAGTCCACGTTCTCCAGCGAGCTCCCCAGGGAGCAGCAGGCACCCACCGGCACCGCCGAGCGCCAGACCCACCGCCCACCGCAATCCCCCCGCAGAACACAACACCCGCTGCCCCCCCGGCTCACCATCCAGGCTCCGGCACAGGAGCTGGGACCGCCTGCTCAGCGTATTCCTATGCGTCGCCAGTCTGTGGGCAGAGGACTTCAGCTGACACCCGGAATTGGCAGCATGCAACACTTTTTTGATGATGACGACAGAATGGTTCCCAGCACTCCAACGCTGGTCGTGCCTCATCGCACAGATGGCTTTGCAGAAGCAATTCACTCTCCGCAGGTCGCTGGTGTCCCGCGCTTCAGGTTTGGCCCTCCTGAAGACATGGCCCAGGCCAGCTCCAGCCACTCCGATCTCGGACAGCTGGCTTCTCAAGGAGGTCTAGGAATGTACGAAACTCCCCTGTTCCTTGCAGCACACGAGGAGGAGTCGGGGGGACGCAGTGTTCCTACCACCCCACTGCAGGTCGCCGCCCCAGTGACGGTCTTCACCGAGTCTCACCCCTCGGACGTGTCTGAGAACGCCTCTCAGTCGGTGCCCATGGTCACCACGTCTGCGGTCGGCCTGTCCGCCCCCGGGGAGGTTGGACAGGGGGACGATGGGGACGAGGTGTTCATGGAGGCGGAGAATGAAGGGGCCAGTGCGGAGGCTTCCCTGGAGTCTGAGAGCCAGCCTGAGATGGAGGAGTCTGGGCAACCATCAGATGATGCCAATCTCCCCTCCACCAGCCAGGACCCACCCTCTAGCAGCTCCTCCGCAGACACCAGCAGCAGTCAGCCAAAACCATTAAGGCTGGTGAACAGACAGCCGCAGCCGATGAGGACGGAAGCGAGAGGCCGCCAGATCACCCGTCAGAGAGGTGTGAGTCATGTGATGGGAGGACGAGGCCGCTTCACCAGAGGAAACATGAGTTAATGCGTTCCCATCTGCACTGCTTGCAGTTGTCAACAGCTACCTACACTCACAATCATTTTCTAGTTTCTGGAGATCAGCTTAGATGTGCTTAAAGCATTGAATGTTTTGTACTTCTGAAGTTTGTGAGTAATCCCtacaatgtaatgtttcattttattaataaaaaaaattgaaagcaagCCTTGGAAAGTTCTTCATCGTGATTGATTGTTTATGGGCACTTGTACCAGTCCTTGGAAGTGTCCTGTTGTGTGGCAGAAGTCAGCGTAGAGGTCAGAGTTGGTTGGTCGGCATCAATCTTAACATTGTAGTATTTTGCcttagaaaacacaaaatagtcaTATCCGTCTGGCTTCTTCGTGTTGGGTAAAGATAAAGCTGAAGTGATTGTTGAGGGGAAACCtttccatttcagtttaatgttGATTTCATTGCTCAGGTAGACTGCTTGTCTTGCTGTCCGAGTCCGAACGTTGTAGATGGAGTACTGCTTGCTTGGAGTCTTGCTGCAGGATTTGGGAGGTTCCTGTTTGTAAGAATATTTTTGGACCAGGCACTACCTCGTTTAAAGAAATAAACGGTTTCTCGTCTTCTCCTGAACGCAGGCACAGACAAAGCTGCACTTATTGTCCCAGACATCCCTCCAAACCCTATGGAAACTAGTTTAGGGTAACCAGGGTCCATGTTCCCATTTTCAAATCTCCAGTACTGCTTGTcctttatGAAGAAAGTTTTTCCTTGGCAGTTACAGCGAGTGAAAACTGTGTCAATGGGAGAGGGAATTCCCCACACATCTGTAATCAGGCGAGCATCTCCCGCAACGCCATTGGAGCTAAGGTGCCAGAAATAATGTCCTGATGGCAATGAAAAAATTGTTCCGTTTTGCAATGTTGTCATCCCATCGGATGGACGACCGCTACATAggttggtttcatttttatCCATTAACAGCGGATTCTTCGAGGGAATGGCACTAAGGATTTCCGGGTTAGCCGTCAGAGTGATGGAAGTATCAGAGCTGGTTGGGACTGCTGGAGACAGGCCGGGCCTCAAAGGTTCAGTTTGCACTAACGCATCCTGGGTTCCTTCTGTAAGCGTGACTGAATCTGCAGGTAATGGTGTTGGAATTGCAGTCTGACCAACTGTTTGAGTGACAACATTACCATCAGAGAGTGTTGGAAACAAGGGGCTGCCGGGTTCCTCTGAAACCATCTCTTGGCCTGTAGTGAAAATGGGCAAAACATGGGCGGTTGTCTGGATGAGCGGTGTAATATCACTACCAACTGCAGCAACTGTCTCCCATATGCTTCCGATGAGAGGGTCAGTAGGTTTAGGTGTGTCTGCTCTGGCAGAATCGGTGGCAGATGTAGATGTCTGGAGTCCTGGAGTAGAACTAGTTTCTGTCTTTCGGTCAGATGACTGAGTGACAGTAATTGGCGAGGTCTCGCTTTCTGTAGCAGGGGTTATTGTGATCCTTGCCTGTCCTGCAAAATCTTCACCAATGAGGGGAGATTGAAGGGTAGAAAAGCCCTCAGGAGATGATGCTGGCTCTGTAGAGGTGGAAGACGGACTCATGGTAAGACGGATTAAGCCTGGGATGGTAAATGTCACACTGTTAGTAGCTGCTGAGGTCTCAGTTGGACCTGTTGAAAAAACGTCTCTCTCAGAAGGTTTGTAGGCGTCTTGTAAAATGTCCTGATGTCCTACAGTGCCTTGATTCAGAGTGAAAATAGTACTCTGTGGTGTGATTGAGAAAGCGGCAGTAAC

Function

GO: NA

KEGG:

id description
K09291 TPR, MLP1, MLP2; nucleoprotein TPR

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005096 True 8832 mRNA 0.54 56 15057323 15078169

Neighbor

gene id symbol gene type direction distance location
AMCG00005094 NA coding upstream 16058 15038438 ~ 15041265 (+)
AMCG00005095 ptgs2,LOC108442416 coding upstream 54216 14998337 ~ 15003107 (+)
AMCG00005097 NA coding upstream 92939 14901810 ~ 14964384 (+)
AMCG00005078 NA coding upstream 220840 14813861 ~ 14836483 (+)
AMCG00005079 rnf2,LOC107677769,LOC107718134,LOC107693737 coding upstream 251419 14800105 ~ 14805904 (+)
AMCG00005084 LOC104956565 coding downstream 8615 15086784 ~ 15092464 (+)
AMCG00005086 NA coding downstream 30714 15108883 ~ 15111266 (+)
AMCG00005085 NA coding downstream 53563 15131732 ~ 15150390 (+)
AMCG00005091 NA coding downstream 118865 15197034 ~ 15200130 (+)
AMCG00005090 NA coding downstream 122677 15200846 ~ 15242199 (+)
G145307 NA non-coding upstream 81937 14973110 ~ 14975386 (+)
G145278 NA non-coding upstream 196167 14838584 ~ 14861156 (+)
G145281 NA non-coding upstream 204582 14846088 ~ 14852741 (+)
G145268 NA non-coding upstream 266196 14778238 ~ 14791127 (+)
G145251 NA non-coding upstream 379726 14676709 ~ 14677597 (+)
G145369 NA non-coding downstream 16800 15094969 ~ 15097012 (+)
G145379 NA non-coding downstream 48417 15126586 ~ 15128571 (+)
G145398 NA non-coding downstream 64315 15142484 ~ 15152739 (+)
G145418 LOC106560501 non-coding downstream 164216 15242385 ~ 15244246 (+)
G145435 NA non-coding downstream 177720 15255889 ~ 15257663 (+)
AMCG00005060 LOC106599426 other upstream 868994 14155155 ~ 14188329 (+)
G144940 NA other upstream 2276153 12780580 ~ 12781170 (+)
G144677 NA other upstream 3393955 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 5041899 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 5306546 9700167 ~ 9750777 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 301430 15379599 ~ 15384811 (+)
G145932 NA other downstream 2687088 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 3736860 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 4396970 19475139 ~ 19530453 (+)
G146305 NA other downstream 4501404 19579573 ~ 19579807 (+)

Expression


Co-expression Network