AMCG00005086


Basic Information

Item Value
gene id AMCG00005086
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15108883 ~ 15111266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005086
aacTTACACACTATGCATGTGTTGATGGCTGGACATATAGCTACTCAAACACAACGATGAATTGGAATGAAGCTAGGAAATGGTGCCAAACCTACTACACAGATATGGTTGCAATTCAGAATCAGGATGAAATCGCATACTTAAATAACATTATGCCCAAGCAACCAAAGTATTACTGGATCGGGATTCGGAAACAAAATGAAGTCTGGACTTGGGTTGGAACCAACAAGACACTTACCAAAGAAGCAGAGAACTGGGCCACAGGTGAACCCAACAACGGAAAGTCGGCTGAGGACTGTGTGGAAATGTATATCAAAAGATCGAAAGATGCCGGGAAGTGGAATGATGAACCTTGCTTGAGGAAAAAATATCCATTGTGCTACACAGCCTCTTGTGATCCACTTTCATGCAGTGGCAATGGGGAATGCattgaacaaattaacaatCACACCTGCAAGTGCAATGAAGGATTCTATGGAGACAAGTGTGAGAATGttgtaaGCTGTGACAGTGTGGAAGTGCCCAGTGAAGGGTTTGTCAGTTGCTCCCATCCATATGGGAATTTTTCCTATAGCTCTGCATGTGAATTTAGCTGCCAAGAGGGATATCATTTGACTGGTTCCAGAAATATCCAGTGCACAGCTTCCAAGCTGTGGTCATCAAAGCCACCAGTCTGTGAAGctgTTCAATGTGACACACTAGAGACCCCTTCAAATGGTTCCTTGCATTGCGTGCACCCACTGGGCAATTTCAGCTTCAACAGTACTTGTGAATTTGCTTGTGACAAGGGATACAGGCTGGTTGGGTCAAGCAGTCTTGCCTGTGGAGCAGCTGGACAATGGAGTGACCTACAACCACAATGTGAAGCTGTGAAGTGCAGCACCCTAGAAACCCCCCAGCATGGCAGTGTGATCTGCTCTCACCCTAATGGGGAGTTCAGTTACAACTCCTCCTGCCAGTTCAGCTGTGCACAGGGGTTTGAGTTAAAAGGTGAGGCAAATCTGACGTGCACAGCATCAACACAATGGACAGGAGAGACGCCACACTGTGCAGCTATTACATGTCAAAGCCCAGAGGCAGTGTCTCACGGTGCCGTGCAGTGCAGCACTCCCATGGAGAGTCAGCACTACAATTCCTCCTGTCAGTTCAGCTGTGAGCCGGGCTTCGTGCTCGAGGGGGCCGAGCGCCTGCAGTGCACGGCCTCTGGACTGTGGAGCGCACACTCCCCTGCTTGTAAAGAAGTTGAACATAGGTACACAGTAGATGAGATTTTAATAAGTTTTGTCTCTGCATTCTTTCCAGCTGTACGGTGTGCAGTATTGTCAGAGGATATGGTAATGAACTGCTCGCATCCACTGGAACCGTTTGCTTACATGTCAGAATGTCACTTTCATTGTCCTGATGGGCTGCTTTTGAATGGATCTGAC

Function

GO: NA

KEGG:

id description
K06496 SELP, CD62P; selectin, platelet

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005086 True 1427 mRNA 0.47 7 15108883 15111266

Neighbor

gene id symbol gene type direction distance location
AMCG00005084 LOC104956565 coding upstream 16419 15086784 ~ 15092464 (+)
AMCG00005096 NA coding upstream 30714 15057323 ~ 15078169 (+)
AMCG00005094 NA coding upstream 67618 15038438 ~ 15041265 (+)
AMCG00005095 ptgs2,LOC108442416 coding upstream 105776 14998337 ~ 15003107 (+)
AMCG00005097 NA coding upstream 144499 14901810 ~ 14964384 (+)
AMCG00005085 NA coding downstream 20466 15131732 ~ 15150390 (+)
AMCG00005091 NA coding downstream 85768 15197034 ~ 15200130 (+)
AMCG00005090 NA coding downstream 89580 15200846 ~ 15242199 (+)
AMCG00005104 NA coding downstream 147131 15258397 ~ 15284450 (+)
AMCG00005103 NA coding downstream 197824 15309090 ~ 15309877 (+)
G145369 NA non-coding upstream 11871 15094969 ~ 15097012 (+)
G145307 NA non-coding upstream 133497 14973110 ~ 14975386 (+)
G145278 NA non-coding upstream 247727 14838584 ~ 14861156 (+)
G145281 NA non-coding upstream 256142 14846088 ~ 14852741 (+)
G145268 NA non-coding upstream 317756 14778238 ~ 14791127 (+)
G145379 NA non-coding downstream 15320 15126586 ~ 15128571 (+)
G145398 NA non-coding downstream 31218 15142484 ~ 15152739 (+)
G145418 LOC106560501 non-coding downstream 131119 15242385 ~ 15244246 (+)
G145435 NA non-coding downstream 144623 15255889 ~ 15257663 (+)
G145577 NA non-coding downstream 842349 15953615 ~ 15954678 (+)
AMCG00005060 LOC106599426 other upstream 920554 14155155 ~ 14188329 (+)
G144940 NA other upstream 2327713 12780580 ~ 12781170 (+)
G144677 NA other upstream 3445515 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 5093459 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 5358106 9700167 ~ 9750777 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 268333 15379599 ~ 15384811 (+)
G145932 NA other downstream 2653991 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 3703763 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 4363873 19475139 ~ 19530453 (+)
G146305 NA other downstream 4468307 19579573 ~ 19579807 (+)

Expression


Co-expression Network