G145418 (LOC106560501)


Basic Information

Item Value
gene id G145418
gene name LOC106560501
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15242385 ~ 15244246 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182914
CAGCAGTTGAGAGAATGATGGTCATtccattgatatatatatatatatatatatatatattgtgtgtgtgtgtgtaatcacCACCTACATTCATATTATAGTTTCCAGATTAGAATGCTACTCAActgcatattgtttttatatacctTCCAGAAGAAGACCAGTAACAACAGAAGTGGGATTTCAAGTCATTTTAATGCGTACTGCTTTTCTGAGAACGTATGATCCATTGCGTGCATTAGGtgctttgtaaaaaaacaacaacaacaataaaaacagtcatGGATGTCTAAGAAGCAACATATAAGTATTTGTACAACACTGCGAAGAGGATGTTCAAGAATGAAATGGAAAACCATCAATAtcaaaataaagtcaaatttgtcattttgttccattttagtGATGTGTTCCATGGAGTATTATACACCTGGTGCATAAATACTTACAGATGGACTATACTTACAGTAATGTGTTATGTGGGgttgaaaattatttataaaaaaataaaaaaaggttgtaATCCATTACTTCAACTAGCTAAATAGACAAAATCTCacttaactttatttttctcatttccttcattattttaattacagtatatacattatatataatagacTTATAGCAGGCAGCGAAACAAAAGCCTTGTCATGCTtggatgaattaattaatttgccagCTCTTCTGGAGGTGAAAAGAgttgtgaaaattaaataaacgatgtaaaaaaaatctatgcacTGCAGACATTAAACCGTAAGCTGTAAAAATTCTAGATATTACATCGTCCACAAAATGAATAAGCCAAGTGGATTGATCTACAATTCACTTAggaatataaaattatttattctttttttttttatacaggaAAGTGCCAGGACccatttttgtagttttctactATTTTCAATAGGCAAAAATGACATTGTATGTAACCTGATGACCATTGTCCCATGAGTAAAGAACTCGGTCCTTGGGATTGTAGTCAATTTGCGTATTATATGTATAGTTGTTTAGGAAAGGAAGCCTGGGAATCATCTgagtgtttgtatgtgtatcaAAGGCATAGGAAATGTTGGCGTTCATCTGGTTGAAGCTGTCCACTGCATACAGAACGCCACACACAATGAAGCAATTCCCGTAGAAGTTCTTCCGGAGACCAGTCCTCCATGTGGTTTCCTTCTGAATGCTCAGATCCGCTGGGTTCAGCTTGCTCAAGATGATCACCTCCTGGTGGAATCCCTCATCATCTATAGCCGGGTAGATGACCCACAGCCCGTTCTCGTCCACGGCAAAGTCGATGTCTGAGTGGCCCCTCCACCTCCAGGGCGTGGCCTCCTCGAACACAGCGTCGTGCAGCATCGTCCATGCAGCAACATACCTCTGCTTCAAGTCAAACTTGATGATGTCACGTGAAAAGGCTCGGTTGTAATAAAATGCGCCACCGAACACCACGTGGCCTGTTCCAATCCAGTTGTAGGGCAGTTTGTAGGAGTTGGTCCAGCGACCTTTTTGAAGCTCTCCATGTTGCGGAACTCTAATAGATTGTTTCCATAATAGTAGTTTGTCACGTAGATCTTGTCATCATTTGCTTTGGGGTCCTTCATCCAGGCCCCTTCGTTTCGACCGTAAGTGTTATGAGTCACAGGATCAGAGATGGTGGACAAGGTGTCCTTACACACTCC

Function

NR:

description
PREDICTED: olfactomedin-like protein 2B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182914 True 1694 lncRNA 0.38 2 15242385 15244246

Neighbor

gene id symbol gene type direction distance location
AMCG00005090 NA coding upstream 186 15200846 ~ 15242199 (+)
AMCG00005091 NA coding upstream 42255 15197034 ~ 15200130 (+)
AMCG00005085 NA coding upstream 91995 15131732 ~ 15150390 (+)
AMCG00005086 NA coding upstream 131119 15108883 ~ 15111266 (+)
AMCG00005084 LOC104956565 coding upstream 149921 15086784 ~ 15092464 (+)
AMCG00005104 NA coding downstream 14151 15258397 ~ 15284450 (+)
AMCG00005103 NA coding downstream 64844 15309090 ~ 15309877 (+)
AMCG00005102 NA coding downstream 93022 15337268 ~ 15347378 (+)
AMCG00005110 plppr5,LOC107739033,LOC107657749,LOC107677304,LOC107712819,LOC106578506 coding downstream 220837 15465083 ~ 15492249 (+)
AMCG00005119 NA coding downstream 374365 15618611 ~ 15627259 (+)
G145398 NA non-coding upstream 89646 15142484 ~ 15152739 (+)
G145379 NA non-coding upstream 113814 15126586 ~ 15128571 (+)
G145369 NA non-coding upstream 145373 15094969 ~ 15097012 (+)
G145307 NA non-coding upstream 266999 14973110 ~ 14975386 (+)
G145278 NA non-coding upstream 381229 14838584 ~ 14861156 (+)
G145435 NA non-coding downstream 11643 15255889 ~ 15257663 (+)
G145577 NA non-coding downstream 709369 15953615 ~ 15954678 (+)
G145593 NA non-coding downstream 792366 16036612 ~ 16047194 (+)
G145630 NA non-coding downstream 985042 16229288 ~ 16231853 (+)
G145731 NA non-coding downstream 1669769 16914015 ~ 16914225 (+)
AMCG00005060 LOC106599426 other upstream 1054056 14155155 ~ 14188329 (+)
G144940 NA other upstream 2461215 12780580 ~ 12781170 (+)
G144677 NA other upstream 3579017 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 5226961 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 5491608 9700167 ~ 9750777 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 135353 15379599 ~ 15384811 (+)
G145932 NA other downstream 2521011 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 3570783 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 4230893 19475139 ~ 19530453 (+)
G146305 NA other downstream 4335327 19579573 ~ 19579807 (+)

Expression


Co-expression Network