G144960


Basic Information

Item Value
gene id G144960
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12947182 ~ 12948973 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182313
ACCATGCAAAATCAAACCGAAATCCAAGGTCAAATATTGTAAAACAGAGACctgtaagaaCGACGATGAGAATGGTAGTCCAGAAGGCCACAGTGACCCCGGTGTAGAGGATGGCGTGCCCGTTCATGTTGCTGTAATCCGACGGGCGCTAATCACACTAAGGCGGCCGTGCCCTTCGACTTTTCCTCTATTGCGGgatgtttaaacacacacatataatttaGTCAGTCTGCAGCTTCTTCCCGATCACTGTTTGAGAGAGGAAGGGGCTGCTTCTCTCCACAGAAGAAGAGGAAGTCGGAAGTCAGCAGCCGGTCATGTGACGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182313 True 326 lncRNA 0.49 2 12947182 12948973

Neighbor

gene id symbol gene type direction distance location
AMCG00005030 LOC102231678,LOC103359748,LOC108430294 coding upstream 136245 12803285 ~ 12810937 (+)
AMCG00005028 slc6a9 coding upstream 166730 12769739 ~ 12780452 (+)
AMCG00005024 NA coding upstream 247721 12696312 ~ 12699461 (+)
AMCG00005023 LOC106599374 coding upstream 339565 12574253 ~ 12607617 (+)
AMCG00005013 LOC107657453 coding upstream 466757 12473551 ~ 12480425 (+)
AMCG00005031 LOC105920302 coding downstream 1530 12950503 ~ 12954868 (+)
AMCG00005032 kiss1ra,LOC108411985,LOC106569085,LOC105898653 coding downstream 69564 13018537 ~ 13028796 (+)
AMCG00005033 NA coding downstream 162244 13111217 ~ 13119024 (+)
AMCG00005035 NA coding downstream 346801 13295774 ~ 13298682 (+)
AMCG00005043 NA coding downstream 389126 13338099 ~ 13363552 (+)
G144942 NA non-coding upstream 163538 12782170 ~ 12783644 (+)
G144908 NA non-coding upstream 330250 12616638 ~ 12616932 (+)
G144811 NA non-coding upstream 689313 12256288 ~ 12257869 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding upstream 704984 12239491 ~ 12242198 (+)
G144805 LOC107679324,LOC107728925 non-coding upstream 750409 12196272 ~ 12196773 (+)
G145007 NA non-coding downstream 256367 13205340 ~ 13208217 (+)
G145017 NA non-coding downstream 308744 13257717 ~ 13259076 (+)
G145039 NA non-coding downstream 366405 13315378 ~ 13317852 (+)
G145067 NA non-coding downstream 624269 13573242 ~ 13573460 (+)
G145147 NA non-coding downstream 1255161 14204134 ~ 14204512 (+)
G144940 NA other upstream 166012 12780580 ~ 12781170 (+)
G144677 NA other upstream 1283814 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2931758 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 3196405 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 5213123 7718273 ~ 7734059 (+)
AMCG00005060 LOC106599426 other downstream 1206182 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 2430626 15379599 ~ 15384811 (+)
G145932 NA other downstream 4816284 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 5866056 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 6526166 19475139 ~ 19530453 (+)

Expression


Co-expression Network