G145017


Basic Information

Item Value
gene id G145017
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13257717 ~ 13259076 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU182378
GCGAATCTTTGAATCTTATTTCTACAAATAGATTGTGCATAGCGAACGAGAAAGAACACACATTTATGAACTTAGAGGCCTAGATTGTAATTGATTGCACGCAGCACTAAACCACATCTTGAGTGTTTGCTCGTGGCAAACATGACAAAGATAagatatgaaaaaatacaacagatcAAATTTATTGACATCAATTGTAATGTCTAGTCAGACAGCTGTGAATATCAAAGGTACAAAAAAATGCTACAAATATACAACTATGGTCAATCAAATTATAACATTATTGAACACACTTAGgtatcagaaaaaataaacagacattcaGATTTGCAGGATAAAAACTGAACACTGCTTCTGCTATGAGCTGCTCATTTACTTCTTCCAACACGGATTTTGAAAAATCTAGAAAGCAGATGACCGGGCTGTGTGGTGCTGACAGCAGCTGGGATTTTCTATAACGGAGGctctttgttgttgctgtttgtaAGTAAAAAGGAATTTAAGTTATTCAACATCACAGGGGAAATTCCGGCAGCATATTGGACTAATCTGTCATTTACTCCTATACCGTGATATAGAAAAGCATGTAGAgtcttgaaaaaaataaaattaaaataactaaaaatgtCAAAGTGTTTCTTAATGTACCCTAGTTTTAACATACAAATGAATTACATAAACtgttttttataaaatgcatttttctttgatAAATGTTTTGGGAAGTTTCACACCAGATGTATTCCGGTATTGGTCCATaacattaagaaacaaacaaacaaaacacctcACAGCATAATACTTTttggttttatacatttccatttatataaaaagtattatatCAAAAAAtcctacttaaaaaaataaataagggaaaTAAATCCTTAACAATGTTCTGGACATCCCCAAGCAAAAAACCCTAATGATAAAATTCCTGACATTCAAGTGTGGCCTAAAACCAATTCAAGAGGAATCTGTTAATTGCTGTTCtctaaaacaaacagcagtcaACTCTTTTATGTTAATACCACTGCTTTTTGTATTATGGTTTAAACAGAAAagtctttaaattaataataatagtaattaaaaaataactttaaaagcaAGCTATTGAGAGCTGAgtaatttcagatatttttataattaggTAGTCCAGATAATCCTTTGTCTATTGTCTAATACAATACATCAATTTTAACAAAGATAGTTTTGGTATATGCTTGCCATTAACACATTTTGGCTTTTgtcaatacttaaaaaaaaaatatatatatatatatatatatataccttacttaaataaaacattaaaagtaaatcaCACATTTGCCTGCCAGAATAATTTGGCTATTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182378 True 1360 lncRNA 0.30 1 13257717 13259076

Neighbor

gene id symbol gene type direction distance location
AMCG00005033 NA coding upstream 138693 13111217 ~ 13119024 (+)
AMCG00005032 kiss1ra,LOC108411985,LOC106569085,LOC105898653 coding upstream 228921 13018537 ~ 13028796 (+)
AMCG00005031 LOC105920302 coding upstream 302849 12950503 ~ 12954868 (+)
AMCG00005030 LOC102231678,LOC103359748,LOC108430294 coding upstream 446780 12803285 ~ 12810937 (+)
AMCG00005028 slc6a9 coding upstream 477265 12769739 ~ 12780452 (+)
AMCG00005035 NA coding downstream 36698 13295774 ~ 13298682 (+)
AMCG00005043 NA coding downstream 79023 13338099 ~ 13363552 (+)
AMCG00005057 NA coding downstream 353530 13612606 ~ 13641696 (+)
AMCG00005058 NA coding downstream 385450 13644526 ~ 13647823 (+)
AMCG00005052 brinp2,LOC106569071,LOC105018207,LOC107720848 coding downstream 663151 13922227 ~ 13941911 (+)
G145007 NA non-coding upstream 49500 13205340 ~ 13208217 (+)
G144960 NA non-coding upstream 308744 12947182 ~ 12948973 (+)
G144942 NA non-coding upstream 474073 12782170 ~ 12783644 (+)
G144908 NA non-coding upstream 640785 12616638 ~ 12616932 (+)
G144811 NA non-coding upstream 999848 12256288 ~ 12257869 (+)
G145039 NA non-coding downstream 56302 13315378 ~ 13317852 (+)
G145067 NA non-coding downstream 314166 13573242 ~ 13573460 (+)
G145147 NA non-coding downstream 945058 14204134 ~ 14204512 (+)
G145251 NA non-coding downstream 1417633 14676709 ~ 14677597 (+)
G145268 NA non-coding downstream 1519162 14778238 ~ 14791127 (+)
G144940 NA other upstream 476547 12780580 ~ 12781170 (+)
G144677 NA other upstream 1594349 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 3242293 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 3506940 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 5523658 7718273 ~ 7734059 (+)
AMCG00005060 LOC106599426 other downstream 896079 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 2120523 15379599 ~ 15384811 (+)
G145932 NA other downstream 4506181 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 5555953 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 6216063 19475139 ~ 19530453 (+)

Expression


Co-expression Network