AMCG00005952


Basic Information

Item Value
gene id AMCG00005952
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13393658 ~ 13396684 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005952
ATGGCGGCCAGGCGCATCACGCAGGAGACCTTCGACGCGGTGGTCCAGGAGAATGTGGACGAGTTCGGGTTGGACCCGGCCGAGGCGCTGGCAGAGGCCGTCGAGCAGTTCGAGTCGCAGGGTGTGGACCTCACTAATATAGTGAAGGCCGTGCAATCAGGAGCTTCAGAGGATGCAAAAGACAATCAGACACATACTGTGCTACAGATTCTGGAATCTCTGCGGGGCCACGTGGGCACTGCCAACGTGGACGGCATGCCGGCAGACCTGAAGCGCTTCACAGAGCAGTGCAAGCTGGGCTTCGCTCAGCGCTACCTGGCCGCCCAGAAGGACGCGTATCCCACGATCCTGGCGTGCTGCAGGAAGGTGGATGGGGAGAAAGCGTCTCTGCTGGCGGCGCTGGATGCACTCTCGTCTCTGACAGACGGACAGCCGGACCTGCTGGATGCGGGCGGGCGTGAGTTCCTGATGGGCATCCTCAGGGAACACCCGGACGACCCCGCCGTGACCGTCCTGGCGGTGCGCGCGGTGCGGCACTGCTGTGTGAAGCACGAGCAGAACAGGCAGGATCTGGTGAAGGCGGGCGTGCTGCCACTGCTCACGGCCACGGTGTCGCGGTACAGCGCCCAGCCCGAGCTGCTGTGCGAGGCCTGTGCCGCGCTGAGGGTCATGACCTTCGACGACGACATCAGGGTCCCCTTCGGTCAAGCCCACGACCACGCCAAGATGATCGTGCTGGAGAACAGCGGGTTAAAGGTCCTCATCGAGGCGGCCAAAGCCCATCCAGACAACACCAGTGTGCTGAGTGAGCTGTGCGGCACGCTGTCACGCCTGGCCGTGAGGAATGAGTTCTGCCAGGACATCGTGGACCTGGGGGGGTTAACGTTCATGATGAGCCTGCTGGCCGACAGTCTGGATCACCAGGACCTGGTGAAGCAGGTGCTGAGCGCCCTGAGAGCCATGGCGGGCAACGATGACGTGAAGGACGCCATCGTGTGTGAGCACGGTtgcgcctctctctctgtcctggcTCTGCGCAAACCCAACAACTGCCGGGTGATCGCGGACAGCGGGGGGCTTCTGGTGGCGCTGCAGGCCATGAAGGCTCACCCGAAGGCACTCAACGTGCAGAAACAGGCCTGCATGGTGCTGCGCAACCTGGTGTCTCGGACCCAGGAACTGTGTCCGGTCATCCTGGAGCTGGGCGCGGAGCCTCTGATCCGGCAGGCCCTGGCCTCGCACCAGGACTGTGGCGACTTGGCGCAGGCTGCCCTTCGAGACCTGGGCTGCGAGGTGGAGCTGAGGGAGCTGTGGACTGGCAAGAAGGGCAGCCTGACCCAGTGA

Function

GO: NA

KEGG:

id description
K24166 ARMC6; armadillo repeat-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005952 True 1344 mRNA 0.64 7 13393658 13396684

Neighbor

gene id symbol gene type direction distance location
AMCG00005924 slc25a42,LOC108239543 coding downstream 6264 13385183 ~ 13387394 (-)
AMCG00005945 tmem161a coding downstream 108930 13279303 ~ 13284728 (-)
AMCG00005944 NA coding downstream 142970 13247754 ~ 13250688 (-)
AMCG00005943 NA coding downstream 148871 13240482 ~ 13244787 (-)
AMCG00005947 NA coding downstream 212122 13172886 ~ 13181536 (-)
AMCG00005953 NA coding upstream 65532 13462216 ~ 13462560 (-)
AMCG00005976 NA coding upstream 134192 13530876 ~ 13533884 (-)
AMCG00005978 LOC106573600,LOC105011525,LOC106613740 coding upstream 164388 13561072 ~ 13567481 (-)
AMCG00005970 atp5d,LOC107554819,LOC106613744,LOC107719603 coding upstream 318300 13714984 ~ 13718428 (-)
AMCG00005969 NA coding upstream 355304 13751988 ~ 13761430 (-)
G155431 NA non-coding downstream 118965 13273640 ~ 13274693 (-)
G155429 NA non-coding downstream 126496 13266963 ~ 13267162 (-)
G155426 NA non-coding downstream 141169 13252122 ~ 13252489 (-)
G155400 NA non-coding downstream 285591 13107812 ~ 13108067 (-)
G155391 NA non-coding downstream 286165 13079485 ~ 13107493 (-)
G155502 NA non-coding upstream 67771 13464455 ~ 13465588 (-)
G155503 NA non-coding upstream 70286 13466970 ~ 13484019 (-)
G155521 NA non-coding upstream 278525 13675209 ~ 13677337 (-)
G155550 NA non-coding upstream 389322 13786006 ~ 13787634 (-)
G155591 NA non-coding upstream 480039 13876723 ~ 13881170 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 237340 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 341939 13036424 ~ 13051719 (-)
AMCG00005936 march2 other downstream 422252 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other downstream 443691 12920123 ~ 12949967 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other downstream 538855 12843765 ~ 12854803 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other upstream 171783 13568467 ~ 13583351 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other upstream 267380 13664064 ~ 13698534 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 762447 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 940207 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 1112549 14509233 ~ 14509614 (-)

Expression


Co-expression Network