AMCG00006404


Basic Information

Item Value
gene id AMCG00006404
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3893263 ~ 3896458 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006404
GCAGGACTGTGTGGAGTGACAGTGGAGGCATCTTGGGAAgtaagtatatacatatattagatatagatagacactgtgcatacactgtactgcacagaCAGTTACTGCAGCCACTGTGATTTATAGACACATGTGTGCAGACTAACTTGTGAAATGTGATTGAAACGGTGTAGCTCTAACTCAGACTGCCACAGCACTGCTGCACAGCTGGAAAGAGGTGACCTTTATAGTACAGCCATGTTAATCAACCTTGTCTCGTCAGCCTCGTCTTATTAAACACCTCTGTTGCTGTGTTTAATTGGTCTCCTGAAACCTGTAAGTTTCGTTTTGAGCTGAAAAGTATGATGAGGGTTTCGTTTCAGCGCTCAGTTTGTggtttaaatatgttaatatgttaacAGTGACGTGCTTGTTCTGAGTTTCTGGGTGAAGGAGCTCACTGGCTGTAGCCTATGACTGGCTGCGTATAGGTCCATTAATGCATTCTCTATGTGGTTCCCTTTCTTTGTAAGTGAGATGAAGAGGTCCTGTCTTCTATTCGGCTTGGTTGCGTTGCATTTGATCTCCGCTCAACCCCTCTCAGTGTCTGTGAAGGTGGGGGAGTCAGTGGTCCTGCCATGTCATGGGACGCCGCAAACAGGGAGTCCACCCCAAGACAGTCTGCACCTGCAGTGGCAGAcccccagggagcgagtgttcGAGTGGAAGCAGGGCACGGTGTACCAGGCACCCCAGTTCCTGGGCCGGGTAGGGCTGGAGGTGGCAAAGGAGGTCGTGGGGGCACAGTGGGACGGCAACTGCTCCCTCCGAATTCAGCCAGTGGAGTTCTCGGACACCGAACTGTATGAGAGTTTCTTTGTGGACACGAGGCGGAGGAGGATGTTCCTACAGAGTGTCTGGCTGACTGTCACAACGGGGGGCCCTGGGGAGTTGTTGTGGCACAATGGACCCCAGGGCAGGTATGGGGACCGGCTGGAGAAAAGAGCTAGAGAGCTGACAGTGAAGCTGCTGACATCAGCTGACCAGGGCAGCTACACTGTGCTGGACAGTCGCAACTGCACCCTCAGCACGGTCACTGTCACTGTGGAGGACCCCCTGACCCTGCCTGAGGAACACAGACACCTGCTGGTGCTCTTCTGGCCTGAGGGAGACACCTCCTCCCCCCGGCCCGTCTACACGCCCCCACGAGGTGGCGAGGGCAGGACAGaggagggagacagggtggtgaTCCAGAGACTGACGCCGGGGCACCAGGGGCTGTATGAAGTGCAGGACGCCCAGGGCAATACTGTGTACAAGCTCAGGCTCAGCGTGGCC

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006404 True 1317 mRNA 0.54 4 3893263 3896458

Neighbor

gene id symbol gene type direction distance location
AMCG00006395 ddx39b,uap56,LOC105012335,LOC104931065,LOC103042292 coding upstream 53265 3832261 ~ 3839998 (+)
AMCG00006394 NA coding upstream 66514 3825568 ~ 3826749 (+)
AMCG00006396 NA coding upstream 69194 3823571 ~ 3824069 (+)
AMCG00006392 NA coding upstream 73439 3814613 ~ 3819824 (+)
AMCG00006389 NA coding upstream 129635 3749003 ~ 3763628 (+)
AMCG00006410 NA coding downstream 23446 3919904 ~ 3920782 (+)
AMCG00006409 NA coding downstream 24776 3921234 ~ 3921928 (+)
AMCG00006408 NA coding downstream 25963 3922421 ~ 3924520 (+)
AMCG00006403 NA coding downstream 183168 4079626 ~ 4082166 (+)
AMCG00006411 LOC108414231,LOC106024139,LOC101061046,LOC101068669,LOC105419728,LOC105419724,LOC105419151,LOC105416979,LOC107747774,LOC105419136 coding downstream 195230 4091688 ~ 4099718 (+)
G109396 NA non-coding upstream 118719 3772549 ~ 3774544 (+)
G109392 NA non-coding upstream 138222 3722519 ~ 3755041 (+)
G109412 NA non-coding upstream 162423 3729887 ~ 3730840 (+)
G109405 NA non-coding upstream 178484 3699108 ~ 3714779 (+)
G109389 NA non-coding upstream 344275 3548614 ~ 3548988 (+)
G109523 LOC100846954 non-coding downstream 13503 3909961 ~ 3911048 (+)
G109530 NA non-coding downstream 39522 3935980 ~ 3936902 (+)
G109532 NA non-coding downstream 47311 3943769 ~ 3943994 (+)
G109541 NA non-coding downstream 80270 3976728 ~ 4035308 (+)
G109571 NA non-coding downstream 259506 4155964 ~ 4156206 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 28531 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 244352 3637743 ~ 3648911 (+)
AMCG00006379 NA other upstream 271467 3570039 ~ 3621796 (+)
AMCG00006385 NA other upstream 280505 3599241 ~ 3612758 (+)
G109362 NA other upstream 386584 3503181 ~ 3506679 (+)
G109538 NA other downstream 67139 3963597 ~ 3963996 (+)
G109570 NA other downstream 256358 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 263065 4159523 ~ 4167952 (+)
G109714 NA other downstream 580476 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 628348 4524806 ~ 4527738 (+)

Expression


Co-expression Network