AMCG00006657 (dera,LOC107725660,LOC107655558,LOC107587132,LOC107694244,LOC107757227,LOC107594694)


Basic Information

Item Value
gene id AMCG00006657
gene name dera,LOC107725660,LOC107655558,LOC107587132,LOC107694244,LOC107757227,LOC107594694
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13392905 ~ 13405015 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006657
GTCAGGAAGTCAGCTTTATTCTGTGTGGAGTGCAGCAGTTACTCCAAACTCAACCACAagtttctgtattgtttaaatcTTATCAGGTTTCCTTCACAATGTCAGCAAGAAACCCAGGGATTGAACTTGACCTAGAATGGCTGTCCAATGTCCGAGTAAATCACCCTGCAGTTTTGAGACGGGCACAGCAAATACAGAGCCGAAAGTTAGTAAAGAAAGAGTGGCAGGCAGCGTGGCTACTGCGAGCGGTGACGTGTATAGACCTGACCACGCTGTCCGGTGATGACACCCCTTCCAACGTCCACCGGCTGTGTTTAAAAGCCACTCGGCCCATCAGGGATGACCTCCTCAAAAGCATGGACATGCATGACAAAGGTGTCACTACAgcggcagtgtgtgtgtacccGGCCCGTGTAGCGGACGCTGTGAAAACACTTCGGGCAGCCAAATCTAACATCCCTGTGGCCTCAGTTGCCACTGGGtttcctgcgggacagacagcCTTGAAAACCCGCATTGAGGAGGTGCGGCAGGCCGTAGAGGATGGAGCCAGCGAGATTGACATTGTCATTAACAGGACCCTGGCGCTCACCGGGCAGTGGCAAGCTCTGTACGACGAGATCCGCCAGTTCAGGGAAGCCTGCGGAGAAGCGCATATGAAGACCATCCTGGCAGTGGGAGACCTAGGGTCCTTCACCAACGTTTACAAAGCCAGTCTGGTAGCTATGATGGCAGGTTCGGATTTCATAAAGACCTCTACTGGGAAGGAGACGGTCAACGCAACATTTCCAGTTGCTATTGTCATGGTGAGGGCCATACGGGACTTCCTGCGGCGCACTGGTCACAAGGTGGGTTTCAAGCCTGCAGGAGGGATCCGCACAGCCAAGGAGTCCCTGGTGTGGCTGACGCTGATGAAGGAGGAGCTGGGAGACGAGTGGCTGAGAGCGGATCTCTTTCGTCTGGGTGCCAGCTCTCTGCTGACAGACATCGAGCGGCAGATCTACCATTACGTGACTGGAAGATACCCAGCGTACTATGAGTTGCCCATGGCCTGAATCCAAGCAGCTTGAAATCTCAGTCAACCTTGTGGTAGAAGCTACTACGAATCTACGAACATAGGTCTTACACCAACTGTAGCCTAAATTAATGCTCTCGTTCATTACAGACCATCCATCCTACAGACaaaattactttatatatataattttttacaaatacataaaaatgggtAATAGTCAGAGAGGGGAATACGTATTAAAACGtactgggggggaaaaaaaatgacttttcaTAAAACCAAGGTTGATGCATTGTTGAGCCTTGGTCCATTAATTCACTATTAATGATTGGCCATCCagattcttttaatttaatgtccaTGACTACAGCGTGCATATCTGAATATAGCAATTATAGTTTAATTTGTGCCTTGAAGAACCCGAACCTGGTAGACCCTCGATGAAAGAAACCTGTTCTTTGAAAGTCAGCCCTGATATGAACCCTGaaagaatttattttataaaacggCTAGATAGACATTCCATCcgcatttttttccccatatttTTTGGCTACTATACTGGTGCTActatacacaaaatatttttcttagcTGAAACGGTTAAATTCTGAACTGGTAAAGTATTAtttatgacattttcattttgttacctaatgtttaatgttatgttttgatatTAGATATGTTACAGTAAAGAAATTACAGTGATTCATgtgaaaacattgaaatcaTTGTACAAATTCAgccacaattaattaattaaaacagtctATTCtcacataattattattgctgtatttattggTCCACAATTCTGTTttagaaatcaataaaacatttggtATTACAC

Function

symbol description
dera Predicted to enable deoxyribose-phosphate aldolase activity. Predicted to be involved in carbohydrate catabolic process and deoxyribonucleotide catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including intermediate cell mass of mesoderm; liver; pronephric duct; retinal pigmented epithelium; and ventral mesoderm. Orthologous to human DERA (deoxyribose-phosphate aldolase).

NR:

description
PREDICTED: deoxyribose-phosphate aldolase-like isoform X2

GO:

id name namespace
GO:0009264 deoxyribonucleotide catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004139 deoxyribose-phosphate aldolase activity molecular_function

KEGG:

id description
K01619 deoC, DERA; deoxyribose-phosphate aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006657 True 1871 mRNA 0.44 9 13392905 13405015

Neighbor

gene id symbol gene type direction distance location
AMCG00006658 NA coding downstream 35427 13353684 ~ 13357478 (-)
AMCG00006654 NA coding downstream 251758 13087455 ~ 13141147 (-)
AMCG00006652 rergl,rergla,LOC107560713,LOC107757225,LOC107594299 coding downstream 330977 13056888 ~ 13061928 (-)
AMCG00006651 NA coding downstream 343585 13041100 ~ 13049320 (-)
AMCG00006648 NA coding downstream 368883 12998449 ~ 13024022 (-)
AMCG00006660 NA coding upstream 9724 13414739 ~ 13417932 (-)
AMCG00006661 NA coding upstream 124360 13529375 ~ 13532102 (-)
AMCG00006664 NA coding upstream 134583 13539598 ~ 13550291 (-)
AMCG00006662 LOC106576661 coding upstream 155442 13560457 ~ 13573463 (-)
AMCG00006669 tmbim4,LOC107757272,LOC107587136,LOC107567270,LOC107694279 coding upstream 205258 13610273 ~ 13616189 (-)
G111182 NA non-coding downstream 433277 12954610 ~ 12959628 (-)
G111158 NA non-coding downstream 632069 12759571 ~ 12760836 (-)
G110957 NA non-coding downstream 1490737 11899963 ~ 11902168 (-)
G110942 NA non-coding downstream 1596563 11794536 ~ 11796342 (-)
G110940 NA non-coding downstream 1599404 11790052 ~ 11793501 (-)
G111389 NA non-coding upstream 598738 14003753 ~ 14004141 (-)
G111421 NA non-coding upstream 731313 14136328 ~ 14137746 (-)
G111448 rap1b,LOC106576640,LOC107695907 non-coding upstream 763116 14168131 ~ 14214816 (-)
G111451 NA non-coding upstream 777766 14182781 ~ 14299856 (-)
G111466 slc35e3,LOC106609860,LOC106576641,LOC107737854,LOC107710682 non-coding upstream 839587 14244602 ~ 14246174 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 514249 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 1252500 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 1262522 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 1323245 12049494 ~ 12069660 (-)
AMCG00006618 crebl2,LOC102781596 other downstream 1368356 12017869 ~ 12024549 (-)
AMCG00006663 hmga2 other upstream 50417 13455432 ~ 13503228 (-)
G111489 NA other upstream 955213 14360228 ~ 14364422 (-)
G111621 NA other upstream 1307002 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 2347806 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 2476115 15881130 ~ 15896869 (-)

Expression


Co-expression Network