G111451


Basic Information

Item Value
gene id G111451
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14182781 ~ 14299856 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU139580
GATCTTTCCAAACCATTTTTTATTGGataaaatgaacaggaaaatGACAACTCCAATATTCTCCAGTGATGTTTTGGACTTTATGTAGAGAATGACCATGAATCAACCAAATAGTTGTAGTTTGGCAGCTAGAAATGACAGTGGCTTCAGAACAACACAAACCCGTAGCAGCTGAGGGGATGCAGGCATGGGACTATATGGGTGCCAGGGTTCTACAGGTTATGTACATTAAATCCACAATGACAAAATCGGGCAAGTGAAGAAAAAGGTTGATTACATAATTAGAATAGTGGAATGCAGGTTTGATCAACCGTGGCTTATGCTTAAGATGGTTacatataaaaggaaaaactagGGTAGAACCAATTAATGATACAACCTGTGCTACAAAGCAAGGTAAACAAAGGAAAGATTCTCCATTTATATCAAGGTTAGTTGACAAGCTTTATAAGAAGGACCTGGGAAAAATGTACACGTTGACATATAAATGTAAGctcagtaaacaaaataaaaatcaaccagTTTACCCAAATGAAAGGAGATCTGAAACCTAGGCGCTTAGTACAAAGTTAATTATactcgatttcttagcagacacccatatccagggtgacttacaattgttacaagatgtCACATTTTTTAGATTTAACCCTTCATACAGGTAGTACCCTATGCtcgagtccagagccctaaccactacacCACACTAATCTACTACTACACACTACTGTCCTAGTTAATGTTAATGTGATGTACCCATGCCAAATGAACTAAGAACTAAGGCTGGTTTAAACAAAGGTCTTAGTGAGCAAATACTTCAATTAAAAGGGTTAGAATAGCCAAAGTGATCCAGAGCTCAAGGGAAAGAAAAACCAGAAGGCTGGCCTCTCCAAGGGCAGAGATCATTCTACTTCTAAAATCTAACATTTAACATGATTGTTACTCATGCAACTGAGCTCTAAAGACCCTGCtatttacagtatttcagtTATTGTTCAGAACACCAACTaaattggaaacaaacaaaactttgaaGGTTTTATTCTCCCCCAAACTCATTCAAAGCCAAGGCCTTCGGTATTACCTGTTCAGTGCCAGCGACCACAGACTAAACCTGGCATGCCTGCTGATCATCCCAGAATGcacacaagcattacatttaaaaaagttaaaccaatatttatttactagcactgttaaaacaatacacaaaacattCAAGTGGCAGATCTTCTTTACTGCAAGCCCTTGCAATGCAATCCAATTTATTGAACTACAGATGCTAGGTTATACAAAATTGCACCACTTTAATTAAGGCTTTTTAGTTTACATTTGGCCACCCCAAAGCAGATGTTGCATTACAAATACTGTGGCTCTGTATTGGACATATACACATGATCTTTACATCCAGGAGTTAATGCATACAAAGCAACAAGGCATTCTTAAATAAATCAGCAAAAGTTACAAACTGCAACTTGCGCCCTGTAACCAATTACACTTGATTAAAATTAGTTCCCACATTCACTACTGACATCCACAGTACTCATCCACCAAGAAACATCTCAACCCAAATATTACACATGTGAAAATCACTAACAGGCAATTTACTAACTGGTTTGAATATTTGGTTTTCCCTCAATTACAACAGATGCATGAGCAAGCAAGGGGATACAGTGAGAATCTACAGGGGCAGAAGCATGAAGAATGACtaacaaatgaaatgtttatttttattctttaaaaaaaccctcattttaaaatatatacttcctGTTGTAGACCCCCACTGTACAAACATCTATTAACATTGTTCCCtatgtaaacaaaaacatacatataagaAAAGGTTGACTTGATTTCAGTTGATTTCTTTTGAATACTAACAGATATTTGAAGGCAACATCTTAGGCTAAAGACAATAGTGACAGAAAACCATTAGATACCTTATTTTTCCAGACACAAATTACTGTTTCCACAGGTTTTCCGAAgataaaatcatattaatagCTGTTGCAATATAGCATCTTGGTAGAACAAAATCtattaattcttaaaaaaacaagaaagggaaaaaaaaaaaaaaggaaaaaaaaaaaagatacaaaataccAAAGGAGCAAAGTTAGCTGTATGAAATAGGCTATATAGGAGCTCTTTGGACTTTTTCTTTTGCTAAAATAGTGGTgcttataaatattacattatactTGACACTGCTTACACAGGCAACATGTCCAGTATACATCAGTTTCTTACATTTACAACATTGGTTGAAGGAGGGCGTCTCCATTAGCAAATAATACTGTGTGTAGGCTCCGgatcttttatttcagttgcatacagttagaatatatataagtaaaaaTCTCTTTCTTGCGATACTGGAGAGTGATTACAGTTATCTATGTGCAAAAACTGACGTAGTAGCTTTTAATCCATTTTGTTAAAGGGTATCACCACACAGGAAAGTCCATTGATGTTAGGTTTAGTAAAGTTGGAATGCTGGCACTGTTGAAAAAGACAACAGTTTATCAGACCTGCAAGGAAAGAAACAAGGGCATTAGtcacatttcagttcaataaaattaacattaatgaatgaatagtaaatggaaaatagaaatatttctatgtgcattgcatttaaaatgtggatTTAGTACTGAAACTGACACTGCCTGAATGCTTGGACAGGTTCAGAGCTACCTTTCTAAACCCTTGCATGCAAACTCTGAACCTTGGGCACAGTCCTAGCAGCAGTGATAAAGGTCTGAATAACAAATTAGCGAGAGCCTTTTTGCATTTCGTGAATCGTTGATAGTAAgtgaatgttattttaaggaTGAATCTGGACCacacttaaaaatacatgtgtttcAATGGGTTTTTAATCTGTGGGAGGCAGAGCTGAAAAAGGTTAGCAACTCCTTTCTACTCTGCATCCacccactgtgtgtgtttgtgtgctgaaACCGatgtagaggaaaaaaaaaaaaagtccatgtCTAAGTTATATAGTTAGGTATCCGAGCAACTGCCATAGTTCTACAAAACTTTGAACACAATATCACACTCCAAAATTGAGAATAAATCTGTTTATGAACCGATCgatttgatttaatcaaataaGGCTCTACAGCGAAAGCCAGAATGTTTGACAAAGAAATTAACACTGCATCAGCTGCTGATACCCTAAGGTCATCTACAATCTGTCACAGATTTATCAAAGACATAATACTTTCATCTTGCCAAAAAAGCTACATTAGGATTCAGCATTATTTGTAATAAGCGGACTGCACTGATGATACAGCTGAAACAGGCTTTTTGCAGTGGGTGAATGTAGTGATTTTAGTCTTGATTCTCCCCCCTATGAAGTACTGTCCTATTCTTAGTCCCAGACTGTTAATTCAGCTCTGCAGTCTATTCAGGATTTAAAGTGATGGCGACTGTGTATCATTGGCCATGATTAGTCAAATCGGTTTTGAACGTTGGCATTCCAAGGTTAATATTCTAAAACGTCTGACAagatcaatcaaatcaatcaatcctgCCTCGAACACACCTGTCCTTATATGATCACAACACAGCCCTCTCCACTCACCTGGCTCAGAGCTACAGTGCACCTGTGTATTAAAGCAGCTGGCAATTAGACTTTTTGCGTGCTTTCCCAGGTGCTGGGGTTTTCCTGTTGATTTGTCGAACCAGGTCATAGAAGATCTGTTAACATTAATCTTTGACTTTGCTGATGACTCTAGGAAGGCGCAGTTGTTCCACTGTCGGGCCAGGTTCTGGCCTTGCTCCTTGCCAACCACCCGCTCGTCTTCCAAGTCACACTTGTTGCCAACCAGGATCATCGGCACCTGAAACACCACAAAACATACAGACAAGATGAGCACAACCTGCACATCAAACAAAGCTGtgcaaaataatcataaaacaattGTTAAGCTTTTGTAATAGGAATGTAGAAAGATTTAGATGCGTTCCTCAGTTTTGTCGTCAGCTGAGAAATACAAGTTGTTTTTGCCTAATCTAGCTTGGCGgtctaaaatgaaaaatcaaaccacataaaaaaaataaaaaataaaaagttaaaaatgattTCACAGACAAGGTTGTGCCAAATTAGTCTGAGTCAGGGTTTTAATTCTTACCAACAAAGACTGGTTAATTCTTTCACAAAGTTAATATTAATGAAGGATTGAGGATAACTAGCATTAATTCCTGGGCTCAGGCTGCCCACAGATAAACGGTCATCCTTACTGATCCAGTATAAGTAACTCCAGGTGGCCCTGGACAATTATCCTCTCAGCCGCCTGACAGTGCAAACCTCTTCGTCATCCTTCCGTTTTGTCATGCCGAGCGAACCAGTGTATCCTGGAAGTACTTACACCCTATTACAGTACATTACCTCACCTAAAACTTAAATCTAGACAACTGAAAGCAAACGCAAGAGAAGCATGTTCGCAGTAAGATGTGTACATGAGTAATAACTGAACACTACTTAAAAT
>TU139581
tagcagtgACAATGCAGATATAATTACATACCTTCTCAAACTGATGTACTATCAAATTTCCAATTTCTGAAAAAACCTGTACTACTGGAGTAATATGATATGAAGGGTTTTTAATCAGTTGGGTTGCTGCAGTCAAAACTTTGGGGCATTACACTGGCTCCCTCAGATGCCAAGGGACAGCCTACAGGGGGGCACAACTCCAGTCTTATAGGGCCAGGTCTGCAGCTTCTAAAGGCATATTGAAATTGattgcaaatttaaaatatgaagtgaGATCTCAAGGCCAGGAGAACACCCACTGGCCCTACATGTGCTGGAGCTGTACACTCCTGCTCTTCACCTACCTACTCcattatttacactttaaaacacaCGCAGCACACTTTTCCCGAGTTGACCTCGATGAGTAAGTTTGTCAATTTCTTCCATATTGCccaacaaaagagaaaaaaaacaatgtagttAAAATTCccaaaacaaattatgaattgCATTTCTGTATGGAGTCTGGAACTGGTGAATATCATGCAATatgaacaataacaaaaaaaaaaaaaaaaaaaaggaaaaaaaaaaaaaaaaaaaaa
>TU139582
GATCTTTCCAAACCATTTTTTATTGGataaaatgaacaggaaaatGACAACTCCAATATTCTCCAGTGATGTTTTGGACTTTATGTAGAGAATGACCATGAATCAACCAAATAGTTGTAGTTTGGCAGCTAGAAATGACAGTGGCTTCAGAACAACACAAACCCGTAGCAGCTGAGGGGATGCAGGCATGGGACTATATGGGTGCCAGGGTTCTACAGGTTATGTACATTAAATCCACAATGACAAAATCGGGCAAGTGAAGAAAAAGGTTGATTACATAATTAGAATAGTGGAATGCAGGTTTGATCAACCGTGGCTTATGCTTAAGATGGTTacatataaaaggaaaaactagGGTAGAACCAATTAATGATACAACCTGTGCTACAAAGCAAGGTAAACAAAGGAAAGATTCTCCATTTATATCAAGGTTAGTTGACAAGCTTTATAAGAAGGACCTGGGAAAAATGTACACGTTGACATATAAATGTAAGctcagtaaacaaaataaaaatcaaccagTTTACCCAAATGAAAGGAGATCTGAAACCTAGGCGCTTAGTACAAAGTTAATTATactcgatttcttagcagacacccatatccagggtgacttacaattgttacaagatgtCACATTTTTTAGATTTAACCCTTCATACAGGTAGTACCCTATGCtcgagtccagagccctaaccactacacCACACTAATCTACTACTACACACTACTGTCCTAGTTAATGTTAATGTGATGTACCCATGCCAAATGAACTAAGAACTAAGGCTGGTTTAAACAAAGGTCTTAGTGAGCAAATACTTCAATTAAAAGGGTTAGAATAGCCAAAGTGATCCAGAGCTCAAGGGAAAGAAAAACCAGAAGGCTGGCCTCTCCAAGGGCAGAGATCATTCTACTTCTAAAATCTAACATTTAACATGATTGTTACTCATGCAACTGAGCTCTAAAGACCCTGCtatttacagtatttcagtTATTGTTCAGAACACCAACTaaattggaaacaaacaaaactttgaaGGTTTTATTCTCCCCCAAACTCATTCAAAGCCAAGGCCTTCGGTATTACCTGTTCAGTGCCAGCGACCACAGACTAAACCTGGCATGCCTGCTGATCATCCCAGAATGcacacaagcattacatttaaaaaagttaaaccaatatttatttactagcactgttaaaacaatacacaaaacattCAAGTGGCAGATCTTCTTTACTGCAAGCCCTTGCAATGCAATCCAATTTATTGAACTACAGATGCTAGGTTATACAAAATTGCACCACTTTAATTAAGGCTTTTTAGTTTACATTTGGCCACCCCAAAGCAGATGTTGCATTACAAATACTGTGGCTCTGTATTGGACATATACACATGATCTTTACATCCAGGAGTTAATGCATACAAAGCAACAAGGCATTCTTAAATAAATCAGCAAAAGTTACAAACTGCAACTTGCGCCCTGTAACCAATTACACTTGATTAAAATTAGTTCCCACATTCACTACTGACATCCACAGTACTCATCCACCAAGAAACATCTCAACCCAAATATTACACATGTGAAAATCACTAACAGGCAATTTACTAACTGGTTTGAATATTTGGTTTTCCCTCAATTACAACAGATGCATGAGCAAGCAAGGGGATACAGTGAGAATCTACAGGGGCAGAAGCATGAAGAATGACtaacaaatgaaatgtttatttttattctttaaaaaaaccctcattttaaaatatatacttcctGTTGTAGACCCCCACTGTACAAACATCTATTAACATTGTTCCCtatgtaaacaaaaacatacatataagaAAAGGTTGACTTGATTTCAGTTGATTTCTTTTGAATACTAACAGATATTTGAAGGCAACATCTTAGGCTAAAGACAATAGTGACAGAAAACCATTAGATACCTTATTTTTCCAGACACAAATTACTGTTTCCACAGGTTTTCCGAAgataaaatcatattaatagCTGTTGCAATATAGCATCTTGGTAGAACAAAATCtattaattcttaaaaaaacaagaaagggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139580 True 4514 lncRNA 0.37 2 14216934 14223328
TU139581 False 587 lncRNA 0.37 3 14182781 14299856
TU139582 False 2112 lncRNA 0.35 2 14185608 14223328

Neighbor

gene id symbol gene type direction distance location
AMCG00006678 NA coding downstream 28449 14139065 ~ 14154332 (-)
AMCG00006676 NA coding downstream 49694 14130780 ~ 14133087 (-)
AMCG00006675 NA coding downstream 59023 14120438 ~ 14123758 (-)
AMCG00006677 NA coding downstream 79711 14101422 ~ 14103070 (-)
AMCG00006673 NA coding downstream 218931 13957481 ~ 13963850 (-)
AMCG00006687 NA coding upstream 65786 14365642 ~ 14366487 (-)
AMCG00006690 LOC103382512 coding upstream 76472 14376328 ~ 14388386 (-)
AMCG00006695 NA coding upstream 286893 14586749 ~ 14632771 (-)
AMCG00006696 NA coding upstream 344751 14644607 ~ 14665799 (-)
AMCG00006698 NA coding upstream 509005 14808861 ~ 14818516 (-)
G111421 NA non-coding downstream 45035 14136328 ~ 14137746 (-)
G111389 NA non-coding downstream 178640 14003753 ~ 14004141 (-)
G111182 NA non-coding downstream 1223153 12954610 ~ 12959628 (-)
G111158 NA non-coding downstream 1421945 12759571 ~ 12760836 (-)
G110957 NA non-coding downstream 2280613 11899963 ~ 11902168 (-)
G111478 NA non-coding upstream 11871 14311727 ~ 14312024 (-)
G111481 NA non-coding upstream 36845 14336701 ~ 14374310 (-)
G111622 NA non-coding upstream 429115 14728971 ~ 14730469 (-)
G111626 NA non-coding upstream 433314 14733170 ~ 14734171 (-)
G111630 NA non-coding upstream 494862 14794718 ~ 14794949 (-)
AMCG00006663 hmga2 other downstream 679553 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 1304125 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 2042376 12137182 ~ 12140405 (-)
AMCG00006622 lrp6 other downstream 2052398 12071390 ~ 12130383 (-)
AMCG00006621 borcs5 other downstream 2113121 12049494 ~ 12069660 (-)
G111489 NA other upstream 60372 14360228 ~ 14364422 (-)
G111621 NA other upstream 412161 14712017 ~ 14753970 (-)
G111767 LOC107575789 other upstream 1452965 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 1581274 15881130 ~ 15896869 (-)
G112059 NA other upstream 3333035 17632891 ~ 17633445 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1703108 NA non-coding NC_048585.1 CM023239.2 5113139 ~ 5114445 (-)