AMCG00007040 (parva,LOC108271331,LOC106587194)


Basic Information

Item Value
gene id AMCG00007040
gene name parva,LOC108271331,LOC106587194
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1477252 ~ 1500014 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007040
ATGGCTTCCTCACCTCAGAAATCTCCGTCTTCTCCCAAGTCTCCGACCCCGAAATCGCCACCTTCAAGGAAGAAAGATGACTCTTTTCTGGGGAAACTTGGAGGAACTTTGGCGAGAAGAAAAAAAGCGAAAGAAGTGTCTGAACTCCAGGAGGAAGGGATGAATGCCATAAATCTCCCTCTCAGCCCAATTCCCTTTGAGCTCGACCCGGAGGACACCATGTTGGAGGAGAATGAAGTCAGAACTATGGTGGATCCAAACTCAAGAAACGATCCTAAACTTCAGGAGCTTATGAAGGTCATAATAGACTGGATCAATGACGTGCTGGTGGGTGAAAGGATCATCGTCAAGGACCTTGCTGAGGATCTGTATGACGGGCAGGTCCTTCAGAAGCTCTTTGAAAAGCTAGGGGAAGAGAAACTGAACGTTGCTGAAGTCACCCAATCAGAAATCGCCCAGAAACAGAAGCTGCAGACGGTCCTGGAAAAGATCAATGACACTCTGAAGATCTCCTCCAGGAATATCAAGTGGAATGTCGACTCTGTTCATGCGAAGAGTCTGGTGGCCATTTTGCACTTGTTAGTAGCCCTATCCCAGCATTTTAGAGCTCCCATCAGGCTTCCTGATCATGTGACCATACAAGTCGTGGTTGTTCAGAAACGTGAGGGAATTCTCCAGTCTCGCCAGGTCCAAGAGGAAATCACTGGCAACACTGAAGCATTATCTGGGAGGCATGAGCGAGATGCGTTTGATACGTTGTTTGATCATGCTCCGGACAAGCTCAATGTTGTGAAGAAGACCCTAATCACCTTTGTCAACaagcatttaaacaagctgaaCTTGGAGGTTGCTGAATTGGATACTCAGTTTGCCGACGGTGTGTACCTTGTGCTGCTCATGGGCCTGCTGGAGGGTTACTTTGTCCCACTGTACAACTTCTTCCTCACCCCTGAAAACTTTGATCAAAAGGTGCATAATGTGTCCTTTTCATTTGAACTAATGCAAGATGGGGGATTGGAAAGACCCAAACCCAGACCTGAAGATATTGTGAACTGTGACCTCAAGTCAACCTTGAGAGTACTCTACAATCTGTTTACTAAATACAGGAATGTggagtaa

Function

symbol description
parva Enables protein kinase inhibitor activity. Involved in cilium assembly and substrate adhesion-dependent cell spreading. Located in actin cytoskeleton; cytosol; and focal adhesion.

NR:

description
PREDICTED: alpha-parvin

GO: NA

KEGG:

id description
K06275 PARV; parvin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007040 True 1119 mRNA 0.47 13 1477252 1500014

Neighbor

gene id symbol gene type direction distance location
AMCG00007039 LOC108441494,LOC103379680 coding downstream 41945 1432423 ~ 1435307 (-)
AMCG00007041 tead1,LOC105016886 coding downstream 66010 1394356 ~ 1411242 (-)
AMCG00007037 NA coding downstream 93673 1377964 ~ 1383579 (-)
AMCG00007035 arntl,arntl1a,LOC108439331,LOC105895625 coding downstream 192225 1265591 ~ 1285027 (-)
AMCG00007036 NA coding downstream 269216 1186641 ~ 1208036 (-)
AMCG00007043 NA coding upstream 4287 1504301 ~ 1518409 (-)
AMCG00007045 NA coding upstream 32445 1532459 ~ 1570344 (-)
AMCG00007044 usp47 coding upstream 99921 1599935 ~ 1626659 (-)
AMCG00007046 NA coding upstream 137101 1637115 ~ 1653312 (-)
AMCG00007047 NA coding upstream 159490 1659504 ~ 1697833 (-)
G20726 NA non-coding downstream 96142 1378456 ~ 1381110 (-)
G20676 NA non-coding downstream 485253 990555 ~ 991999 (-)
G20614 NA non-coding downstream 540750 906596 ~ 936502 (-)
G20617 NA non-coding downstream 557145 914130 ~ 920107 (-)
G20612 NA non-coding downstream 573517 902919 ~ 903735 (-)
G20795 NA non-coding upstream 176290 1676304 ~ 1730479 (-)
G20802 NA non-coding upstream 222542 1722556 ~ 1727167 (-)
G20870 NA non-coding upstream 671890 2171904 ~ 2172483 (-)
G20908 NA non-coding upstream 700039 2200053 ~ 2308118 (-)
G20914 NA non-coding upstream 786810 2286824 ~ 2288618 (-)
G20630 NA other downstream 524190 952236 ~ 953062 (-)
G20609 NA other downstream 559423 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 1063126 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 1114958 356618 ~ 362294 (-)
G20397 LOC100846954 other downstream 1217016 259583 ~ 260236 (-)
AMCG00007059 NA other upstream 642661 2142675 ~ 2196855 (-)
AMCG00007072 NA other upstream 1144891 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 1976054 3476068 ~ 3500670 (-)
G21426 NA other upstream 3541645 5041659 ~ 5049520 (-)
G21429 NA other upstream 3556773 5056787 ~ 5057406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G207367 parvaa,LOC108441481,LOC107686640,LOC105910371,LOC107589155,LOC108269306,LOC107707483 non-coding NC_035920.1 CM008323.1 22868488 ~ 22883037 (+)