AMCG00007130


Basic Information

Item Value
gene id AMCG00007130
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 4884584 ~ 4893296 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007130
CGCACGGCTACCCGTAGTTCTCCTAGTGAGTTGTGTGGAAAGGTGGCAAGATGGCGTTGGAGCCGAATAAGACCGAGATTTTAACCATTTTCAAAAGGCTTCGGTCCATTCCGACGAATAAGGCTTGTTTTGACTGTGCGGCTAAGAATCCCAGCTGGGCCAGTATCCCCTATGGAGTCTTCTTGTGTATCGATTGCTCTGGGATACATCGATCTCTAGGAGTGCATCTTAGCTTTATCAGATCCACAGAACTAGATTCCAACTGGAACTGGTTTCAGCTGAGGTGTATGCAGGTTGGAGGCAATGCCAATGCAatggCCTTCTTCCGCCAGCATGGCTGTACAACCAATGATACGAATGCAAAGTACAACAGTAGAGCCGCACAGATGTACCGGGAGAAGATCCGACAGCTGGCGAACGCTGCCCTCTCTAAACACGGCACTGATCTCTGGATCGAGGGACAGAGCAGCACCCAAGGCCAGACTCCTGAAAAGAAGGATTGCGACTTCTTTGCTGAACACACTCAGCTCGCCAGCAGCTGGGATATGAGCCCGTCCTTATCGGATCAGAACGGCACCATCGCTCCGCAGGTTTTGGACGAGTCACCAAAAGTACCGGAGAACCCGAACAGCCaatcGGAAGAAGGGCCGAGTATTGAAGGCCTGAGCACGTCTCCCATCAGCACTATTGAGGACTCGATGCGTTTGGCATCGGACCAACCTCAGTCTTCAACAGAGTTGAAGCCCTCCATTATTGGGAAGAAAAAGCCAGCAGCTGCTAAAAAGGggCTGGGCGCTAAAAAAGGTCTCGGCGCGCAGAAGGTCAGCAGCCAGAGCTTCACAGAGATCGAGAGACAGGCCCAGGTGGCCGAGAAGCTGCGGCAGCAGCAGGCCAGTGAGGCCAAGAAGCAGGAGGAGGAATCCATTGTGGCCTCCATGCGTTTGGCTTACCAGGAATTGCAGATCGACCGGAAAAAGGAGGACAAGAAGATGCAGAATATGGAGGGGAAGAAGAGAGAGCAGGCAGAGCGGCTGGGCATGGGATTCGGCAGCAGGAGTGCGGTTTCTCACTCCGTATTATCAGAGATGCAAGTTATCGAACAGGAGACCCCGGCGGCTGCCAAGTCCTCCCGCTCCAAGCTGGACATGTTTGACGAGCCTGGATTCACGTCCGGACCACCGAAGTACAAGGACAACCCGTTCTCCACGGGAGATGGCTTCGGCTCACATTGGGATTCAGACGGCAGTTCATCGTTCTCCTCTTGGGCTCTGGAGAAAGAGGAGCCAAAGGACAGCGAGGTGACGATCTCCAGCATCCAGCCCATCGGGGAGAGGCTCCCCAGCAGACGGAAGCAGGAGAGCGCCGTGACCATGGCGGAGTCCAGTGAGGCTCGGCAGAAGTTCGCCAACGCCAAAGCCATCTCGTCCGACATGTTCTTCGGCAGGGAGAGCGACGCAGAGTATGAGGCCAAGACCCGGGCGTCCTCTCTGGAGAGCGTGCTTCCCTCCGGGCCGGATATCGCCCAGTTCAAACAGGGCGTGAAGACGGTGGCAGGGAAGATGGCGGTGCTGGCCAACGGGGACCGCTACGGCTCTTACTGAGGACGGACCCCCGCGTGGATCCGGGTGTCTTGCTGTACCTGCATTAAAACGAGCGAGCAGCGGGGGGGGGAGCGTGACTGCGATCTGGGGAACCTCGCGCCCCCTTCCCCGTCTACCCACCCGGCCTCTGTAGAGAGATGTGttgaaacagtattttttttttccggaaacatttcagttttctttccaGGGGATCGCACTGCTAGATAGTTGTTTCTCAGATCTGATCACTAACAGTTTATTCAAGCCGTGGTGCGTCTGTTCTTCAACGGTATTGTTTTCTATATGAAACggtcagcatttaaaaaacctATATAATAAATTTGAAAATCTGTTAATATTTATATCCCAAGTTATTTCAACCTCCTCTCCTCTTATTACccattttttgtttagtttttttaaccgAAGATCTCTCCAGCATGAATGTACCGCTCGGTCCCGAACGGGAATCCCTCACCGAAGCGTCTTGACAACTCTGACGATGTGTGTTTTAGTTCAAGGCTCTCATTTTGTGCGATCGTGTTTCTCAAgctgctttttgttgtttttagtctCTGACTGGATAATATTGGATATTTATATTGTCTAGAATATATACAAGACAAAAAAAGCCTTTTACAGCTGAACAAATTAAGAATTAGCACTGAATTTTTTTGATTAAATCCTAGGACCTGatttttaactgtaaaatgGTCTCTAACCGCAGATTCAAAGGAACAAAAGAactgaacaatgaaaataaaagccttttattcacacatttatttaaaacgtTGGTGCAATACATCTGCTTTGTCATAAACCTCTTCCATCATAAAGCCATAAATCGCAGTGTGATGCATGAGTTTTATAACCTTGTGTGCGGCTCATTTACACGCATATTAATTTTGccgtagagagagagagagacatgatGACTGAAACCGTCTCGTTTTATTTACTGGTGCTTAATTGTCATGTACACGGGTGGCGCAGTCCGGCCCAGGTTGAGAAACGACCCTGTTCACTGAACTTCAGTGTCCCATATCGAaactgcccccaccccccccctgGGCAGTGTCCGAGTTTGCCAAAGACGTGGAAGaatgtttattctgtgtgttttgactATTTCGGAAGCGTAGTGCTGCGGTTTACAGGCTCACTGTGGTTTTTACAGGCCGGCCCAATTCCCCCACCGCCGTCTGCATGAGTCTCCCGCGCCGGGCTGTGCCACGTGACGCAGAGCCGATCGAGTGACGTAAACCCTGGTCGGTCACAACACTGTCTGCACTATGCCCTGGCGTTGAAACGAGCTGCGGTCGAAAGCCggatctctgtctctgtctcgtTCTGTCTATTGTATGGTCCCAGGGAGGGCCGTGTTCGATTCTGGTCTTTTAACCAGTGCCTACTGTGGGCCCTGGGCCGTGGAACAGCCACCCCTGTATGTGACGAGCCCCCCGTATTATAACCTGCGTCagtatatttcattatttatttttcacaccaGAAACGGACCCCTTGAGGTGTTCTCTGGTCATTACAATCTGTAATTTCTGCAATACCACAAGCCTAACCGTTCACTGCGTGTACATGAATGAACCGCCAGCTGTTTGCAGTGTCATGTTCATTTATCGTTATGATTTTCAGGTCTCCTGTGGATATTTTGGGAGTTGTGGGAAGTGGTTCACAATAAGGACCCTGACGCACATTGATGGCTTACCGTAGAAAAGAGACTGTTTGGGTTTTAGGTGTGATGTTTTGTAGAAGGAATGAGAAGCACATAATCTAGGAGTAAATCAGTGTTGAGGCTTTGCAACTTGTAAATCTAAATGGCCTCAACGTTTTCTTCCTCACGTAATTCAAATGATAGGGATCcgttctttaaaatatgaagccaAGGAAATCAACGGACatgtttttaactgttttaatacGTTTACCAGCGTTGTCATGCGAACACGGGGATGGGTTTTGTGTCGTAGCCATGCCCTGTCGGTGTAATTATTGCCCTGCCTGTCTCATCTGCTCCCCATGTGAAAAAGTGATGATATAAATCCCCCCCCAGGTAAAATACAAGTCTATTGTAGGTAacttaagaaaatacaaagaacTTTGTGTCAATAAACCTTGAAACCCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007130 True 3726 mRNA 0.49 17 4884584 4893296

Neighbor

gene id symbol gene type direction distance location
AMCG00007122 large2,gyltl1b,LOC107670096,LOC107670633,LOC107554994,LOC107602128 coding downstream 183270 4684255 ~ 4701314 (-)
AMCG00007123 LOC101072525 coding downstream 212753 4661836 ~ 4671831 (-)
AMCG00007121 NA coding downstream 226416 4642250 ~ 4658168 (-)
AMCG00007119 LOC103379080 coding downstream 404179 4467672 ~ 4480405 (-)
AMCG00007114 NA coding downstream 529530 4352056 ~ 4355054 (-)
AMCG00007132 pacsin3,LOC106587102 coding upstream 2346 4895642 ~ 4918493 (-)
AMCG00007133 NA coding upstream 25241 4918537 ~ 4920610 (-)
AMCG00007131 NA coding upstream 31833 4925129 ~ 4931622 (-)
AMCG00007129 NA coding upstream 55209 4948505 ~ 4958670 (-)
AMCG00007137 NA coding upstream 219966 5113262 ~ 5121365 (-)
G21367 dhcr7 non-coding downstream 173658 4681049 ~ 4710926 (-)
G21286 NA non-coding downstream 511459 4357713 ~ 4373125 (-)
G21249 NA non-coding downstream 605015 4279316 ~ 4279569 (-)
G21122 NA non-coding downstream 1381739 3501883 ~ 3502845 (-)
G21082 NA non-coding downstream 1475876 3408154 ~ 3408708 (-)
G21414 NA non-coding upstream 48775 4942071 ~ 4945720 (-)
G21418 NA non-coding upstream 66220 4959516 ~ 4959753 (-)
G21419 NA non-coding upstream 70061 4963357 ~ 4963560 (-)
G21423 NA non-coding upstream 133906 5027202 ~ 5027726 (-)
G21462 NA non-coding upstream 239032 5132328 ~ 5132542 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 1383914 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 2220935 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 2687729 2142675 ~ 2196855 (-)
G20630 NA other downstream 3931522 952236 ~ 953062 (-)
G20609 NA other downstream 3966755 845929 ~ 917829 (-)
G21426 NA other upstream 148363 5041659 ~ 5049520 (-)
G21429 NA other upstream 163491 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 923513 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 1114344 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 2431128 7324424 ~ 7342341 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location