AMCG00007249 (LOC105889041)


Basic Information

Item Value
gene id AMCG00007249
gene name LOC105889041
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8695461 ~ 8698149 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007249
ATGATGCCCAGCGGGTTGGCAGCTGTCCTGCCACTGTCACCCCACCAGGTTTGCGCCGCTTTAGGCAGTTCGGTCATTACTTTTGTCTCTTTCCTGCTGATCCGGCAACTTGTGAAGCAGAGGAGACCCAGAGGTTTCCCCCCGGGGCCGACGCCGCTGCCTCTCATTGGGAATATCCTGTCTCTGGCCTCGGAGCCGCATGTCTACATGAAGAAACAAAGTGAAACCTACGGACAGatttttagtCTTGATCTGGGTGGCATATCAACAGTTATACTTAATGGTTATGATGCCATTAAAGAGTGTCTTTTACACCAGAGTGAAGTTTTTGCTGATAGGCCCTCACTGCCCTTATTTATAAAGATGACAAAAATGGGAGGTCTTCTTAATTGTAAATATGGTCGGGGTTGGATTGAACATCGCAAGCTGGCCGTCAACAGTCTACGATACTTCGGCTACGGCCAAAAGACTTTTGAGAACAAAATCTCTGAAGAGTGTATGGTTTTTGTCGATGCTATCGACAAACACAAAGGAAAGCCTTTCAACCCGAAGCACCTGGTGACCAATGCAGTGTCCAACATAACCAACCTCATCATCTTTGGAGAACGCTTCACGTACGATGACACAGAGTTTCAGCAGATGATTGAAATATTTAGTGAGAACATAGAACTGGCAGCTAGCGGCTGGGCCTTTCTCTACAATGCGTTTCCTTGGATCAGGATTCTCCCCTTCGGAAAGCATCAGAAGTTGTTCCGCAACGCTGCCGAGGTGTATGACTTTCTGCTGCGGATAATCGAGCGCTTCTCTCAGAACAGAGTGAGTCAGTCACCGCGACACTACATCGACGTCTATTTTGATGAGATGGAGCAGAACGCGAGCGATACGGCGGCCTCATACTCAAAGGAAAATTTAATATTCTCAGTGGGTGAACTCATTATTGCCGGAACAGAAACGACAACGAACGCAATACGCTGGGCGATGCTCTACATGGCTCTTTACCCAAACATCCAAGATAAGGTGCAGAAAGAAATAGACAGTGTTGTTGGCAACAACAAGCCTCCTTCTTTGGAAGACAAGCCCAGGATGCCGTATACTGAAGCCGTGCTGCACGAGGTCTTGCGCCTCTGTAACATCGCTCCTCTGGGCATCTTCCGCGCCACTTCTGAAGATGCTGTGGTTAGAGGATACTCCATTCCTCGGGGGACCACTGTGATAACCAATCTGTACTCTGTTCACTTTGATGAAAAATACTGGAGCAGTCCCGAGCAGTTCAGTCCGGAGAGATTCTTGGACTGTCATGGACACTTCATGAAGAGAGAGGCATTTGTACCATTTTCATTAGGCAAG

Function

NR:

description
PREDICTED: vitamin D 25-hydroxylase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07419 CYP2R1; vitamin D 25-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007249 True 1347 mRNA 0.48 4 8695461 8698149

Neighbor

gene id symbol gene type direction distance location
AMCG00007248 psma1,LOC107748950,LOC107687760 coding downstream 69116 8620538 ~ 8626345 (-)
AMCG00007247 copb1 coding downstream 78162 8603478 ~ 8617299 (-)
AMCG00007246 rras2,LOC106676223 coding downstream 135021 8552097 ~ 8560440 (-)
AMCG00007240 tub,LOC106587536,LOC106562367,LOC107750543,LOC107754678 coding downstream 228667 8443327 ~ 8466794 (-)
AMCG00007239 rpl27a,LOC107687759 coding downstream 512275 8180558 ~ 8183186 (-)
AMCG00007255 sox6,LOC107700618,LOC107593388,LOC107754684 coding upstream 283421 8981570 ~ 9011201 (-)
AMCG00007256 sox6 coding upstream 393783 9091932 ~ 9098606 (-)
AMCG00007261 NA coding upstream 490462 9188611 ~ 9233981 (-)
AMCG00007260 plekha7,LOC103378745 coding upstream 620031 9318180 ~ 9318690 (-)
AMCG00007258 NA coding upstream 633040 9331189 ~ 9335174 (-)
G22249 NA non-coding downstream 4710 8690198 ~ 8690751 (-)
G22217 NA non-coding downstream 252317 8439852 ~ 8443144 (-)
G22193 NA non-coding downstream 440794 8253893 ~ 8254667 (-)
G22191 NA non-coding downstream 442797 8252027 ~ 8252664 (-)
G22111 NA non-coding downstream 710951 7913604 ~ 7984510 (-)
G22298 NA non-coding upstream 277968 8976117 ~ 8980818 (-)
G22305 NA non-coding upstream 482869 9181018 ~ 9184829 (-)
G22393 NA non-coding upstream 719619 9417768 ~ 9437269 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding upstream 900543 9598692 ~ 9599154 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding upstream 926417 9624566 ~ 9624878 (-)
G22200 NA other downstream 299237 8393196 ~ 8396224 (-)
G21942 NA other downstream 1188586 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 1353120 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 2641397 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 2875177 5816809 ~ 5820284 (-)
AMCG00007267 NA other upstream 759339 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 1261913 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 1454331 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 1489159 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 1566896 10265045 ~ 10272695 (-)

Expression


Co-expression Network