AMCG00007262 (rps13,LOC107586033)


Basic Information

Item Value
gene id AMCG00007262
gene name rps13,LOC107586033
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9335727 ~ 9339155 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007262
ACGCAGGCCCTGATCTGCGCGCAGCCTCGCTCtggtctctctcttcctctagATCGCCATCATGGGTCGTATGCACGCTCCCGGAAAGGGCTTGTCCCAGTCGGCGCTGCCATACAGGCGCAGTGTGCCCACATGGCTGAAACTAACATCTGATGATGTTAAAGAACAGATCTACAAATTGGCCAAGAAGGGTCTGACTCCCTCACAGATTGGTGTGATCCTGAGGGACTCCCATGGTGTTGCCCAGGTGCGTTTCGTAACTGGCAACAAGATCCTGAGAATCCTGAAGTCGAAGGGCCTGGCCCCCGACCTTCCTGAGGATTTGTATCACCTGATCAAGAAGGCGGTGGCTGTCAGGAAGCACTTGGAAAGGAACAGAAAGGACAAGGATGCCAAGTTCCGTCTGATTCTCATTGAGAGCAGAATTCACAGACTGGCCCGTTACTACAAGACCAGGAGAGTACTCCCACCCAACTGGAAGTACGAATCTTCCACAGCTTCAGCCCTGGTTGCATAAATTTCATCACGTACTGGATAAATAAATGGCTACACTCTGATGAAAAACCTGTTCTTGTTTTGTCTTTCCTTcatcttaaaaatgtaacacgggctataaataaaaccaatcacTGAACAGGAGCTTTGTTTGTGTTGAAGTTTGAGTTTGTTGGAAACTGCAAATTTCATTTGGCAAGCAGATTATAAATGATCCAAAGTAGAATAACTGATGTAAAGGAAAGAGGTTTATCACAAGAATATGACTACAGTTTGTTAAACTTTTAAATAGGATCTTTTCCTGAGGTGGGGGGTGAGGTGATGGTGATTAAACTTTGGGGTGGGTAGTGCACTAATTGTCAAACgatgcattcaaaataaaattcttACAGCGC

Function

symbol description
rps13 Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleolus. Orthologous to human RPS13 (ribosomal protein S13).

NR:

description
40S ribosomal protein S13

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02953 RP-S13e, RPS13; small subunit ribosomal protein S13e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007262 True 890 mRNA 0.46 6 9335727 9339155

Neighbor

gene id symbol gene type direction distance location
AMCG00007258 NA coding downstream 553 9331189 ~ 9335174 (-)
AMCG00007260 plekha7,LOC103378745 coding downstream 17037 9318180 ~ 9318690 (-)
AMCG00007261 NA coding downstream 101746 9188611 ~ 9233981 (-)
AMCG00007256 sox6 coding downstream 237121 9091932 ~ 9098606 (-)
AMCG00007255 sox6,LOC107700618,LOC107593388,LOC107754684 coding downstream 324526 8981570 ~ 9011201 (-)
AMCG00007259 NA coding upstream 10889 9350044 ~ 9383687 (-)
AMCG00007268 NA coding upstream 72485 9411640 ~ 9426782 (-)
AMCG00007266 nat10 coding upstream 134738 9473893 ~ 9487688 (-)
AMCG00007269 NA coding upstream 156493 9495648 ~ 9511339 (-)
AMCG00007272 ext2 coding upstream 305280 9644435 ~ 9683079 (-)
G22305 NA non-coding downstream 150898 9181018 ~ 9184829 (-)
G22298 NA non-coding downstream 354909 8976117 ~ 8980818 (-)
G22249 NA non-coding downstream 644976 8690198 ~ 8690751 (-)
G22217 NA non-coding downstream 892583 8439852 ~ 8443144 (-)
G22193 NA non-coding downstream 1081060 8253893 ~ 8254667 (-)
G22393 NA non-coding upstream 78613 9417768 ~ 9437269 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding upstream 259537 9598692 ~ 9599154 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding upstream 285411 9624566 ~ 9624878 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding upstream 294654 9633809 ~ 9640829 (-)
G22505 NA non-coding upstream 693973 10033128 ~ 10044315 (-)
G22200 NA other downstream 939503 8393196 ~ 8396224 (-)
G21942 NA other downstream 1828852 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 1993386 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 3281663 6007640 ~ 6054064 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 3515443 5816809 ~ 5820284 (-)
AMCG00007267 NA other upstream 118333 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 620907 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 813325 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 848153 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 925890 10265045 ~ 10272695 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_02947832_02950047 RPS13, RPS13.L, RS13 coding CI01000026 null 2947689 ~ 2950067 (+)